Index

A

add_alphas() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) add_column() (biogeme.database.container.Database method) add_parameter() (biogeme.parameters.Parameters method) add_prefix_suffix_to_all_variables() (in module biogeme.expressions.add_prefix_suffix) add_suffix_to_all_variables() (biogeme.expressions.multiple_expressions.MultipleExpression method) add_trailing_zero() (in module biogeme.results_processing.latex_output) AIC_BIC_dimension() (in module biogeme.multiobjectives) aic_bic_dimension() (in module biogeme.multiobjectives) akaike_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) algo_parameters (biogeme.biogeme.BIOGEME property), [1] algorithm_has_converged (biogeme.results_processing.estimation_results.EstimationResults property) AlgorithmResults (class in biogeme.likelihood.model_estimation) all_alpha_fixed() (biogeme.nests.OneNestForCrossNestedLogit method) all_alphas_fixed() (biogeme.nests.NestsForCrossNestedLogit method) all_configurations() (biogeme.catalog.controller.Controller method) all_parameters_tuple() (in module biogeme.default_parameters) all_results (biogeme.catalog.specification.Specification attribute) alternatives (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ANALYTICAL (biogeme.second_derivatives.SecondDerivativesMode attribute) analytical_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) analytical_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) And (class in biogeme.expressions.logical_and)

are_derivatives_available (biogeme.results_processing.estimation_results.EstimationResults property) AssistedSpecification (class in biogeme.assisted) attributes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) audit() (biogeme.model_elements.model_elements.ModelElements method) audit_belongsto() (in module biogeme.expressions.audit) audit_chosen_alternative() (in module biogeme.model_elements.audit) audit_dataframe() (in module biogeme.database.audit) audit_default() (in module biogeme.expressions.audit) audit_draws() (in module biogeme.expressions.audit) audit_expression() (in module biogeme.expressions.audit) audit_integrate() (in module biogeme.expressions.audit) audit_loglogit() (in module biogeme.expressions.audit) audit_montecarlo() (in module biogeme.expressions.audit) audit_panel() (in module biogeme.model_elements.audit) audit_panel_dataframe() (in module biogeme.database.audit) audit_randomvariable() (in module biogeme.expressions.audit) audit_variables() (in module biogeme.model_elements.audit) AuditTuple (class in biogeme.audit_tuple) av (biogeme.expressions.logit_expressions.LogLogit attribute) availabilities (biogeme.expressions.base_expressions.LogitTuple attribute) available (biogeme.database.audit.ChosenAvailable attribute) axis_one (biogeme.tools.ellipse.Ellipse attribute) axis_two (biogeme.tools.ellipse.Ellipse attribute)

B

bayesian_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) BelongsTo (class in biogeme.expressions.belongs_to) best_iteration (biogeme.biogeme.BIOGEME attribute), [1] BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) beta (biogeme.expressions.linear_utility.LinearTermTuple attribute) Beta (class in biogeme.expressions.beta_parameters) (class in biogeme.results_processing.recycle_pickle) beta_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_expression() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_name() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_names (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) beta_ref_code() (biogeme.segmentation.segmentation.Segmentation method) beta_values (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) betas (biogeme.expressions.linear_utility.LinearUtility attribute) bfgs_linesearch_for_biogeme() (in module biogeme.optimization) bfgs_trust_region_for_biogeme() (in module biogeme.optimization) bhhh (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BHHH (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bhhh_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bhhhs (biogeme.function_output.DisaggregateFunctionOutput attribute) BinaryMax (class in biogeme.expressions.binary_max) BinaryMin (class in biogeme.expressions.binary_min) BinaryOperator (class in biogeme.expressions.binary_expressions) bio_bfgs() (in module biogeme.optimization) bio_newton() (in module biogeme.optimization) bioDraws() (in module biogeme.expressions.deprecated) BIOGEME (class in biogeme.biogeme), [1] biogeme.assisted module biogeme.audit_tuple module biogeme.biogeme module, [1] biogeme.biogeme_logging module biogeme.calculator.function_call module biogeme.calculator.hessian_calculation module biogeme.calculator.multiple_formula module biogeme.calculator.simple_formula module biogeme.calculator.single_formula module biogeme.catalog.catalog module biogeme.catalog.catalog_iterator module biogeme.catalog.central_controller module biogeme.catalog.configuration module biogeme.catalog.controller module biogeme.catalog.generic_alt_specific_catalog module biogeme.catalog.segmentation_catalog module biogeme.catalog.specification module biogeme.check_parameters module biogeme.cnl module biogeme.constants module biogeme.data.mdcev_data module biogeme.data.optima module biogeme.data.swissmetro module biogeme.database.audit module biogeme.database.container module biogeme.database.mdcev module biogeme.database.panel module biogeme.database.sampling module biogeme.default_parameters module biogeme.deprecated module biogeme.dict_of_formulas module biogeme.distributions module biogeme.draws.factory module biogeme.draws.generators module biogeme.draws.management module biogeme.draws.native_draws module biogeme.exceptions module biogeme.expressions.add_prefix_suffix module biogeme.expressions.audit module biogeme.expressions.base_expressions module biogeme.expressions.belongs_to module biogeme.expressions.beta_parameters module biogeme.expressions.binary_expressions module biogeme.expressions.binary_max module biogeme.expressions.binary_min module biogeme.expressions.collectors module biogeme.expressions.comparison_expressions module biogeme.expressions.conditional_sum module biogeme.expressions.convert module biogeme.expressions.cos module biogeme.expressions.deprecated module biogeme.expressions.derive module biogeme.expressions.divide module biogeme.expressions.draws module biogeme.expressions.elem module biogeme.expressions.elementary_expressions module biogeme.expressions.elementary_types module biogeme.expressions.exp module biogeme.expressions.integrate module biogeme.expressions.jax_utils module biogeme.expressions.linear_utility module biogeme.expressions.log module biogeme.expressions.logical_and module biogeme.expressions.logical_or module biogeme.expressions.logit_expressions module biogeme.expressions.logzero module biogeme.expressions.minus module biogeme.expressions.montecarlo module biogeme.expressions.multiple_expressions module biogeme.expressions.multiple_product module biogeme.expressions.multiple_sum module biogeme.expressions.named_expression module biogeme.expressions.normalcdf module biogeme.expressions.numeric_expressions module biogeme.expressions.numeric_tools module biogeme.expressions.panel_likelihood_trajectory module biogeme.expressions.plus module

biogeme.expressions.power module biogeme.expressions.power_constant module biogeme.expressions.random_variable module biogeme.expressions.rename_variables module biogeme.expressions.sin module biogeme.expressions.times module biogeme.expressions.unary_expressions module biogeme.expressions.unary_minus module biogeme.expressions.validation module biogeme.expressions.variable module biogeme.expressions.visitor module biogeme.expressions_registry module biogeme.filenames module biogeme.floating_point module biogeme.function_output module biogeme.likelihood.bootstrap module biogeme.likelihood.linear_regression module biogeme.likelihood.model_estimation module biogeme.likelihood.negative_likelihood module biogeme.loglikelihood module biogeme.lsh module biogeme.mdcev.database_utils module biogeme.mdcev.gamma_profile module biogeme.mdcev.generalized module biogeme.mdcev.mdcev module biogeme.mdcev.non_monotonic module biogeme.mdcev.translated module biogeme.model_elements.audit module biogeme.model_elements.model_elements module biogeme.models.boxcox module biogeme.models.cnl module biogeme.models.logit module biogeme.models.mev module biogeme.models.nested module biogeme.models.ordered module biogeme.models.piecewise module biogeme.multiobjectives module biogeme.nests module biogeme.optimization module biogeme.parameters module biogeme.partition module biogeme.results module biogeme.results_processing.compilation module biogeme.results_processing.estimation_results module biogeme.results_processing.f12_output module biogeme.results_processing.html_output module biogeme.results_processing.latex_output module biogeme.results_processing.pandas_output module biogeme.results_processing.pareto module biogeme.results_processing.raw_estimation_results module biogeme.results_processing.recycle_pickle module biogeme.results_processing.variance_covariance module biogeme.sampling_of_alternatives.choice_set_generation module biogeme.sampling_of_alternatives.generate_model module biogeme.sampling_of_alternatives.sampling_context module biogeme.sampling_of_alternatives.sampling_of_alternatives module biogeme.second_derivatives module biogeme.segmentation.database module biogeme.segmentation.one_segmentation module biogeme.segmentation.segmentation module biogeme.segmentation.segmentation_context module biogeme.segmentation.segmented_beta module biogeme.tools.checks module biogeme.tools.database module biogeme.tools.derivatives module biogeme.tools.ellipse module biogeme.tools.files module biogeme.tools.formatting module biogeme.tools.likelihood_ratio module biogeme.tools.primes module biogeme.tools.serialize_numpy module biogeme.tools.simulate module biogeme.tools.time module biogeme.tools.unique_ids module biogeme.validation.cross_validation module biogeme.validation.prepare_validation module biogeme.validation.split_databases module biogeme.validity module biogeme.version module biogeme_file_name (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) biogeme_parameters (biogeme.catalog.specification.Specification attribute) BiogemeError BiogemeUnpickler (class in biogeme.results_processing.recycle_pickle) bioLinearUtility() (in module biogeme.expressions.deprecated) bioMax() (in module biogeme.expressions.deprecated) bioMin() (in module biogeme.expressions.deprecated) bioMultSum() (in module biogeme.expressions.deprecated) bioNormalCdf() (in module biogeme.expressions.deprecated) bioResults (class in biogeme.results) bootstrap (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BOOTSTRAP (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bootstrap() (in module biogeme.likelihood.bootstrap) bootstrap_sample() (biogeme.database.container.Database method) bootstrap_samples (biogeme.biogeme.BIOGEME property), [1] bootstrap_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) bootstrap_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bounds (biogeme.expressions_registry.ExpressionRegistry property) boxcox() (in module biogeme.models.boxcox) broadcast() (biogeme.expressions_registry.ExpressionRegistry method) build_linear_terms() (in module biogeme.likelihood.linear_regression) build_normalized_formula() (in module biogeme.likelihood.linear_regression) build_ordered_thresholds() (in module biogeme.models.ordered) build_vectorized_function() (in module biogeme.expressions.jax_utils)

C

calc_p_value() (in module biogeme.results_processing.estimation_results) calculate_baseline_utility() (biogeme.mdcev.mdcev.Mdcev method) calculate_init_likelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_inverse_of_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_inverse_of_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_log_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_log_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_mu_utility() (biogeme.mdcev.non_monotonic.NonMonotonic method) calculate_null_loglikelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_prime_numbers() (in module biogeme.tools.primes) calculate_single_formula() (in module biogeme.calculator.single_formula) calculate_single_formula_from_expression() (in module biogeme.calculator.single_formula) calculate_test() (biogeme.results_processing.estimation_results.EstimationResults method) calculate_utilities() (biogeme.mdcev.mdcev.Mdcev method) calculates_correlation_matrix() (in module biogeme.results_processing.estimation_results) calculates_estimated_values() (biogeme.segmentation.segmentation.Segmentation method) calculating_second_derivatives (biogeme.biogeme.BIOGEME property), [1] CallableExpression (class in biogeme.calculator.function_call) Catalog (class in biogeme.catalog.catalog) catalog_name (biogeme.expressions.multiple_expressions.CatalogItem attribute) catalog_size() (biogeme.expressions.multiple_expressions.MultipleExpression method) CatalogItem (class in biogeme.expressions.multiple_expressions) center_x (biogeme.tools.ellipse.Ellipse attribute) center_y (biogeme.tools.ellipse.Ellipse attribute) central_controller (biogeme.catalog.specification.Specification attribute) CentralController (class in biogeme.catalog.central_controller) change_init_values() (biogeme.biogeme.BIOGEME method), [1] (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.multiple_expressions.MultipleExpression method) check (biogeme.default_parameters.ParameterTuple attribute) check_algo_name() (in module biogeme.check_parameters) check_availability_of_chosen_alt() (in module biogeme.database.audit) check_calculating_second_derivatives() (in module biogeme.check_parameters) check_consistency_of_named_dicts() (in module biogeme.tools.checks) check_derivatives() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.derivatives) check_expression() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_for_invalid_yaml_values() (in module biogeme.results_processing.raw_estimation_results) check_intersection() (biogeme.nests.NestsForNestedLogit method) check_mev_partition() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_names() (biogeme.nests.Nests method) check_parameter_value() (biogeme.parameters.Parameters static method) check_partition() (biogeme.nests.NestsForNestedLogit method) (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_union() (biogeme.nests.Nests method) check_valid_alternatives() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_validity() (biogeme.nests.NestsForCrossNestedLogit method) (in module biogeme.dict_of_formulas)

CheckDerivativesResults (class in biogeme.tools.derivatives) children (biogeme.expressions.base_expressions.Expression attribute) choice (biogeme.expressions.base_expressions.LogitTuple attribute) (biogeme.expressions.logit_expressions.LogLogit attribute) choice_availability_statistics() (in module biogeme.database.audit) choice_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ChoiceSetsGeneration (class in biogeme.sampling_of_alternatives.choice_set_generation) chosen (biogeme.database.audit.ChosenAvailable attribute) ChosenAvailable (class in biogeme.database.audit) cnl() (in module biogeme.models.cnl) cnl_avail() (in module biogeme.models.cnl) cnl_CDF() (in module biogeme.cnl) cnl_cdf() (in module biogeme.cnl) cnl_G() (in module biogeme.cnl) cnl_g() (in module biogeme.cnl) cnl_nests (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) cnlmu() (in module biogeme.models.cnl) collect_init_values() (in module biogeme.expressions.collectors) column_exists() (biogeme.database.container.Database method) combined_variables (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) compare_parameters() (in module biogeme.results_processing.latex_output) ComparisonOperator (class in biogeme.expressions.comparison_expressions) compile_estimation_results() (in module biogeme.results_processing.compilation) compile_results_in_directory() (in module biogeme.results_processing.compilation) CompiledFormulaEvaluator (class in biogeme.calculator.single_formula) complete_dict_of_free_beta_values() (biogeme.expressions_registry.ExpressionRegistry method) condition (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) condition_number (biogeme.results_processing.estimation_results.EstimationResults property) ConditionalSum (class in biogeme.expressions.conditional_sum) ConditionalTermTuple (class in biogeme.expressions.conditional_sum) confidence_intervals() (biogeme.biogeme.BIOGEME method), [1] config_id (biogeme.catalog.specification.Specification property) Configuration (class in biogeme.catalog.configuration) configure_expression() (biogeme.catalog.specification.Specification method) contains_log_likelihood() (biogeme.biogeme.BIOGEME method), [1] contains_python_tags() (in module biogeme.results_processing.raw_estimation_results) controller (biogeme.catalog.configuration.SelectionTuple attribute) Controller (class in biogeme.catalog.controller) controller_size() (biogeme.catalog.controller.Controller method) convergence (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) convert_random_generator_tuple() (in module biogeme.draws.native_draws) convert_to_dict() (in module biogeme.function_output) correlation() (biogeme.nests.NestsForCrossNestedLogit method) (biogeme.nests.NestsForNestedLogit method) cos (class in biogeme.expressions.cos) cos_phi (biogeme.tools.ellipse.Ellipse attribute) count_number_of_groups() (in module biogeme.tools.database) count_number_of_specifications() (in module biogeme.catalog.central_controller) countNumberOfGroups() (in module biogeme.tools.database) covariance() (biogeme.nests.NestsForCrossNestedLogit method) create_backup() (in module biogeme.tools.files) create_function_simple_expression() (in module biogeme.calculator.simple_formula) cross_validate_model() (in module biogeme.validation.cross_validation) CrossVariableTuple (class in biogeme.sampling_of_alternatives.sampling_context) current_name() (biogeme.catalog.controller.Controller method)

D

data_jax (biogeme.database.container.Database property) data_name (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) database (biogeme.catalog.specification.Specification attribute) (biogeme.model_elements.model_elements.ModelElements property) Database (class in biogeme.database.container) dataframe (biogeme.database.container.Database property) decreased_controller() (biogeme.catalog.central_controller.CentralController method) deep_flat_copy() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method)

default_specification() (biogeme.catalog.specification.Specification class method) define_new_variables() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) define_variable() (biogeme.database.container.Database method) DefineVariable() (biogeme.database.container.Database method) delegate_to_selected() (in module biogeme.expressions.multiple_expressions) deprecated() (in module biogeme.deprecated) deprecated_parameters() (in module biogeme.deprecated) deprecated_wrapper() (in module biogeme.expressions.deprecated) derivative_utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Derive (class in biogeme.expressions.derive) describe() (biogeme.catalog.specification.Specification method) description (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) description_of_native_draws() (in module biogeme.draws.native_draws) deserialize_from_yaml() (in module biogeme.results_processing.raw_estimation_results) dict_of_alpha (biogeme.nests.OneNestForCrossNestedLogit attribute) dict_of_expressions (biogeme.expressions.elem.Elem attribute) dimension() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) DisaggregateFunctionOutput (class in biogeme.function_output) DiscreteSegmentationTuple (class in biogeme.segmentation.segmentation_context) display_messages() (in module biogeme.audit_tuple) Divide (class in biogeme.expressions.divide) dogleg (biogeme.biogeme.BIOGEME property), [1] draw_confidence_ellipse() (in module biogeme.results_processing.latex_output) draw_ellipse() (in module biogeme.tools.ellipse) draw_type (biogeme.draws.factory.DrawSpec attribute) draw_types() (biogeme.expressions_registry.ExpressionRegistry method) DrawFactory (class in biogeme.draws.factory) DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) draws (biogeme.expressions_registry.ExpressionRegistry property) Draws (class in biogeme.expressions.draws) draws_indices (biogeme.expressions_registry.ExpressionRegistry property) draws_jax (biogeme.draws.management.DrawsManagement property) draws_names (biogeme.expressions_registry.ExpressionRegistry property) draws_processing_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) DrawsManagement (class in biogeme.draws.management) DrawSpec (class in biogeme.draws.factory) dummy_database() (biogeme.database.container.Database class method) dump_file() (biogeme.parameters.Parameters method) dump_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults method) DuplicateError

E

eigen_structure() (biogeme.results_processing.estimation_results.EstimationResults method) Elem (class in biogeme.expressions.elem) Elementary (class in biogeme.expressions.elementary_expressions) ElementsTuple (class in biogeme.expressions_registry) Ellipse (class in biogeme.tools.ellipse) embed_expression() (biogeme.expressions.base_expressions.Expression method) enlarging_factor (biogeme.biogeme.BIOGEME property), [1] Equal (class in biogeme.expressions.comparison_expressions) errors (biogeme.audit_tuple.AuditTuple attribute) errors_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) errors_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) estimate() (biogeme.biogeme.BIOGEME method), [1] estimate_catalog() (biogeme.biogeme.BIOGEME method), [1] estimate_parameters() (biogeme.mdcev.mdcev.Mdcev method) EstimateVarianceCovariance (class in biogeme.results_processing.variance_covariance) estimation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) estimation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) estimation_results (biogeme.mdcev.mdcev.Mdcev property) EstimationResults (class in biogeme.results_processing.estimation_results) EstimationValidationIndices (class in biogeme.validation.prepare_validation) EstimationValidationModels (class in biogeme.validation.split_databases) evaluate() (biogeme.calculator.multiple_formula.MultiRowEvaluator method) (biogeme.calculator.single_formula.CompiledFormulaEvaluator method) evaluate_expression() (in module biogeme.calculator.single_formula) evaluate_formula() (in module biogeme.calculator.single_formula)

evaluate_hessian_in_subprocess() (in module biogeme.calculator.hessian_calculation) evaluate_individual() (biogeme.calculator.single_formula.CompiledFormulaEvaluator method) evaluate_model_per_row() (in module biogeme.calculator.single_formula) evaluate_simple_expression() (in module biogeme.calculator.simple_formula) evaluate_simple_expression_per_row() (in module biogeme.calculator.simple_formula) exp (class in biogeme.expressions.exp) expression (biogeme.expressions.multiple_expressions.NamedExpression attribute) Expression (class in biogeme.expressions.base_expressions) expression_configuration_iterator() (biogeme.catalog.central_controller.CentralController method) expression_iterator() (biogeme.catalog.central_controller.CentralController method) expression_to_value() (in module biogeme.expressions.convert) expression_type (biogeme.expressions.beta_parameters.Beta property) (biogeme.expressions.draws.Draws attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.random_variable.RandomVariable attribute) (biogeme.expressions.variable.Variable attribute) ExpressionCollector (class in biogeme.expressions.collectors) ExpressionRegistry (class in biogeme.expressions_registry) expressions (biogeme.expressions_registry.ElementsTuple attribute) (biogeme.expressions_registry.ExpressionRegistry property) expressions_names_indices() (in module biogeme.expressions_registry) expressions_registry (biogeme.biogeme.BIOGEME property), [1] ExpressionVisitor (class in biogeme.expressions.visitor) extract_multiple_expressions_controllers() (in module biogeme.catalog.central_controller) extract_rows() (biogeme.database.container.Database method) extract_slice() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method)

F

FileNotFound files_of_type() (in module biogeme.tools.files) final_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) final_loglikelihood (biogeme.results_processing.estimation_results.EstimationResults property) find_class() (biogeme.results_processing.recycle_pickle.BiogemeUnpickler method) findiff_g() (in module biogeme.tools.derivatives) findiff_h() (in module biogeme.tools.derivatives) FINITE_DIFFERENCES (biogeme.second_derivatives.SecondDerivativesMode attribute) finite_differences_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) finite_differences_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) fix_betas() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) FIXED_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) fixed_beta_values (biogeme.expressions.base_expressions.Expression attribute) fixed_betas (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_values (biogeme.expressions_registry.ExpressionRegistry property) flatten_database() (biogeme.database.panel.PanelDatabase method) (in module biogeme.tools.database) forecast() (biogeme.mdcev.mdcev.Mdcev method) forecast_bisection_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_bruteforce_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_comparison_one_draw() (biogeme.mdcev.mdcev.Mdcev method) format_comment() (in module biogeme.parameters) format_memory_size() (in module biogeme.tools.formatting) format_real_number() (in module biogeme.results_processing.html_output) (in module biogeme.results_processing.latex_output) format_timedelta() (in module biogeme.tools.time) format_with_period() (in module biogeme.results_processing.latex_output) formula (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute)

formula_names (biogeme.model_elements.model_elements.ModelElements property) FREE_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) free_betas (biogeme.expressions_registry.ExpressionRegistry property) free_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) free_betas_names (biogeme.biogeme.BIOGEME property), [1] (biogeme.expressions_registry.ExpressionRegistry property) from_configuration() (biogeme.biogeme.BIOGEME class method), [1] from_configuration_and_controller() (biogeme.biogeme.BIOGEME class method), [1] from_dict() (biogeme.catalog.catalog.Catalog class method) (biogeme.catalog.configuration.Configuration class method) from_expression_and_weight() (biogeme.model_elements.model_elements.ModelElements class method) from_pickle_file() (biogeme.results_processing.estimation_results.EstimationResults class method) from_string() (biogeme.catalog.configuration.Configuration class method) from_string_id() (biogeme.catalog.specification.Specification class method) from_tuple() (biogeme.draws.native_draws.RandomNumberGeneratorTuple class method) (biogeme.nests.OneNestForCrossNestedLogit class method) (biogeme.nests.OneNestForNestedLogit class method) from_tuple_of_configurations() (biogeme.catalog.configuration.Configuration class method) from_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults class method) function (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.tools.derivatives.CheckDerivativesResults attribute) function_evaluator (biogeme.biogeme.BIOGEME property), [1] function_from_compiled_formula() (in module biogeme.calculator.function_call) function_from_expression() (in module biogeme.calculator.function_call) function_output (biogeme.function_output.NamedFunctionOutput attribute) function_parameters (biogeme.biogeme.BIOGEME property), [1] FunctionOutput (class in biogeme.function_output) functions (biogeme.function_output.DisaggregateFunctionOutput attribute)

G

gamma_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) GammaProfile (class in biogeme.mdcev.gamma_profile) Generalized (class in biogeme.mdcev.generalized) generate_document() (biogeme.parameters.Parameters method) generate_draws() (biogeme.draws.factory.DrawFactory method) (biogeme.draws.management.DrawsManagement method) generate_epsilons() (biogeme.mdcev.mdcev.Mdcev method) generate_f12_file() (in module biogeme.results_processing.f12_output) generate_html (biogeme.biogeme.BIOGEME property), [1] generate_html_file() (in module biogeme.results_processing.html_output) generate_latex_file() (in module biogeme.results_processing.latex_output) generate_latex_file_content() (in module biogeme.results_processing.latex_output) generate_named_output() (biogeme.model_elements.model_elements.ModelElements method) generate_operator() (biogeme.assisted.AssistedSpecification method) generate_pickle (biogeme.biogeme.BIOGEME property), [1] generate_segment_size() (in module biogeme.sampling_of_alternatives.sampling_of_alternatives) generate_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) generate_unique_ids() (in module biogeme.tools.unique_ids) generate_utility() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) generate_yaml (biogeme.biogeme.BIOGEME property), [1] GenerateModel (class in biogeme.sampling_of_alternatives.generate_model) generator (biogeme.draws.factory.DrawSpec attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) generic_alt_specific_catalogs() (in module biogeme.catalog.generic_alt_specific_catalog) generic_name (biogeme.catalog.specification.Specification attribute) get_all_controllers() (biogeme.catalog.catalog.Catalog method) get_alpha_dict() (biogeme.nests.NestsForCrossNestedLogit method) get_alpha_values() (biogeme.nests.NestsForCrossNestedLogit method) get_antithetic() (in module biogeme.draws.generators) get_attributes_from_expression() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) get_beta() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_beta_ref_name() (biogeme.segmentation.segmentation.Segmentation method) get_beta_values() (biogeme.results_processing.estimation_results.EstimationResults method) get_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_betas_for_sensitivity_analysis() (biogeme.results_processing.estimation_results.EstimationResults method) get_children() (biogeme.expressions.base_expressions.Expression method) get_class_name() (biogeme.expressions.base_expressions.Expression method) get_column() (biogeme.database.container.Database method) get_complete_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_confidence_ellipse() (biogeme.results_processing.estimation_results.EstimationResults method) get_configuration() (biogeme.catalog.central_controller.CentralController method) get_cross_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_default_value() (in module biogeme.parameters) get_default_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_dict_expressions() (in module biogeme.expressions.convert) get_dict_values() (in module biogeme.expressions.convert) get_element() (biogeme.catalog.specification.Specification method) get_elementary_expression() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_estimated_parameters() (biogeme.results_processing.estimation_results.EstimationResults method) get_expression() (in module biogeme.dict_of_formulas) get_f12() (in module biogeme.results_processing.f12_output) get_file_logger() (in module biogeme.biogeme_logging) get_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) get_generator() (biogeme.draws.factory.DrawFactory method) get_halton_draws() (in module biogeme.draws.generators) get_html() (biogeme.catalog.configuration.Configuration method) (in module biogeme.version) get_html_condition_number() (in module biogeme.results_processing.html_output) get_html_correlation_results() (in module biogeme.results_processing.html_output) get_html_estimated_parameters() (in module biogeme.results_processing.html_output) get_html_footer() (in module biogeme.results_processing.html_output) get_html_general_statistics() (in module biogeme.results_processing.html_output) get_html_header() (in module biogeme.results_processing.html_output) get_html_one_pair_of_parameters() (in module biogeme.results_processing.html_output) get_html_one_parameter() (in module biogeme.results_processing.html_output) get_html_preamble() (in module biogeme.results_processing.html_output) get_index() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_iterator() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_latex() (in module biogeme.version) get_latex_estimated_parameters() (in module biogeme.results_processing.latex_output) get_latex_general_statistics() (in module biogeme.results_processing.latex_output) get_latex_one_parameter() (in module biogeme.results_processing.latex_output) get_latex_preamble() (in module biogeme.results_processing.latex_output) get_latin_hypercube_draws() (in module biogeme.draws.generators) get_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_lsh_weights() (in module biogeme.lsh) get_mev_for_cross_nested() (in module biogeme.models.cnl) get_mev_for_cross_nested_mu() (in module biogeme.models.cnl) get_mev_for_nested() (in module biogeme.models.nested) get_mev_for_nested_mu() (in module biogeme.models.nested) get_mev_generating_for_nested() (in module biogeme.models.nested) get_named_betas_values() (biogeme.expressions_registry.ExpressionRegistry method)

get_nest() (in module biogeme.nests) get_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_new_file_name() (in module biogeme.filenames) get_normal_wichura_draws() (in module biogeme.draws.generators) get_operator_decreased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_increased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_two_controllers() (biogeme.catalog.central_controller.CentralController method) get_pandas_correlation_results() (in module biogeme.results_processing.pandas_output) get_pandas_estimated_parameters() (in module biogeme.results_processing.pandas_output) get_pandas_one_pair_of_parameters() (in module biogeme.results_processing.pandas_output) get_pandas_one_parameter() (in module biogeme.results_processing.pandas_output) get_param_tuple() (biogeme.parameters.Parameters method) get_parameter_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_prime_numbers() (in module biogeme.tools.primes) get_reference_beta() (biogeme.segmentation.segmentation.Segmentation method) get_results() (biogeme.catalog.specification.Specification method) get_screen_logger() (in module biogeme.biogeme_logging) get_selection() (biogeme.catalog.configuration.Configuration method) get_sign_for_p_value() (in module biogeme.results_processing.latex_output) get_string_id() (biogeme.catalog.configuration.Configuration method) get_sub_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_text() (in module biogeme.version) get_uniform() (in module biogeme.draws.generators) get_value() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.parameters.Parameters method) get_value_and_derivatives() (in module biogeme.calculator.single_formula) get_value_c() (in module biogeme.calculator.single_formula) get_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_version() (in module biogeme.version) getHtml() (in module biogeme.version) getLaTeX() (in module biogeme.version) getMevForCrossNested() (in module biogeme.models.cnl) getMevForCrossNestedMu() (in module biogeme.models.cnl) getMevForNested() (in module biogeme.models.nested) getMevForNestedMu() (in module biogeme.models.nested) getMevGeneratingForNested() (in module biogeme.models.nested) getText() (in module biogeme.version) getValue() (biogeme.expressions.logit_expressions.LogLogit method) getVersion() (in module biogeme.version) gradient (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) gradient_norm (biogeme.results_processing.estimation_results.EstimationResults property) gradients (biogeme.function_output.DisaggregateFunctionOutput attribute) Greater (class in biogeme.expressions.comparison_expressions) GreaterOrEqual (class in biogeme.expressions.comparison_expressions)

H

halton2() (in module biogeme.draws.native_draws) halton3() (in module biogeme.draws.native_draws) halton5() (in module biogeme.draws.native_draws) hessian (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

hessians (biogeme.function_output.DisaggregateFunctionOutput attribute)

I

id_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) identification_chosen_alternatives() (biogeme.mdcev.mdcev.Mdcev method) identification_threshold (biogeme.biogeme.BIOGEME property), [1] import_document() (biogeme.parameters.Parameters method) include_cnl_alphas() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) increased_controller() (biogeme.catalog.central_controller.CentralController method) index_of() (in module biogeme.expressions.logit_expressions) indices (biogeme.expressions_registry.ElementsTuple attribute) individuals (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) infeasible_cg (biogeme.biogeme.BIOGEME property), [1] info_gamma_parameters() (biogeme.mdcev.mdcev.Mdcev method) init_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1] initial_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) initial_radius (biogeme.biogeme.BIOGEME property), [1] insert_valid_keyword() (in module biogeme.dict_of_formulas) Integrate() (in module biogeme.expressions.deprecated) IntegrateNormal (class in biogeme.expressions.integrate) intersection() (biogeme.nests.OneNestForNestedLogit method) is_any_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_boolean() (in module biogeme.check_parameters)

is_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_complex() (biogeme.expressions.base_expressions.Expression method) is_empty() (biogeme.database.container.Database method) is_fixed (biogeme.expressions.beta_parameters.Beta property) is_free (biogeme.expressions.beta_parameters.Beta property) is_hessian_available (biogeme.results_processing.estimation_results.EstimationResults property) is_integer() (in module biogeme.check_parameters) is_model_complex() (biogeme.biogeme.BIOGEME method), [1] is_next_alternative_chosen() (biogeme.mdcev.mdcev.Mdcev method) is_non_negative() (in module biogeme.check_parameters) is_number() (in module biogeme.check_parameters) is_numeric() (in module biogeme.expressions.numeric_tools) is_panel() (biogeme.database.container.Database method) (biogeme.model_elements.model_elements.ModelElements method) is_positive() (in module biogeme.check_parameters) is_similar_to() (in module biogeme.dict_of_formulas) is_valid() (biogeme.assisted.AssistedSpecification method) is_valid_filename() (in module biogeme.tools.files) issue_deprecation_warning() (in module biogeme.deprecated) item_index (biogeme.expressions.multiple_expressions.CatalogItem attribute) item_name (biogeme.expressions.multiple_expressions.CatalogItem attribute)

L

large_data_set (biogeme.biogeme.BIOGEME property), [1] largest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) largest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) largest_neighborhood (biogeme.biogeme.BIOGEME property), [1] Less (class in biogeme.expressions.comparison_expressions) LessOrEqual (class in biogeme.expressions.comparison_expressions) likelihood_ratio_init (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_null (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_test() (biogeme.results_processing.estimation_results.EstimationResults method) (in module biogeme.tools.likelihood_ratio) likelihoodregression() (in module biogeme.loglikelihood) LinearTermTuple (class in biogeme.expressions.linear_utility) LinearUtility (class in biogeme.expressions.linear_utility) list_of_all_betas_in_expression() (in module biogeme.expressions.collectors) list_of_alternatives (biogeme.nests.OneNestForNestedLogit attribute) list_of_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_draws_in_expression() (in module biogeme.expressions.collectors) list_of_expressions() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_fixed_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) list_of_random_variables_in_expression() (in module biogeme.expressions.collectors) list_of_terms (biogeme.expressions.linear_utility.LinearUtility attribute) list_of_variables_in_expression() (in module biogeme.expressions.collectors) log (class in biogeme.expressions.log) log_like (biogeme.biogeme.BIOGEME property), [1] log_like_name (biogeme.biogeme.BIOGEME attribute), [1] log_statistics() (biogeme.assisted.ParetoPostProcessing method) logcnl() (in module biogeme.models.cnl) logcnl_avail() (in module biogeme.models.cnl) logcnlmu() (in module biogeme.models.cnl)

logger (in module biogeme.database.container) (in module biogeme.segmentation.database) logisticcdf() (in module biogeme.distributions) logit() (in module biogeme.models.logit) logit_choice_avail() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.multiple_expressions.MultipleExpression method) LogitTuple (class in biogeme.expressions.base_expressions) loglike (biogeme.biogeme.BIOGEME property), [1] loglikelihood (biogeme.model_elements.model_elements.ModelElements property) loglikelihood() (biogeme.mdcev.mdcev.Mdcev method) (in module biogeme.loglikelihood) loglikelihood_dimension() (in module biogeme.multiobjectives) loglikelihoodregression() (in module biogeme.loglikelihood) LogLogit (class in biogeme.expressions.logit_expressions) loglogit() (in module biogeme.models.logit) logmev() (in module biogeme.models.mev) logmev_endogenous_sampling() (in module biogeme.models.mev) logmev_endogenousSampling() (in module biogeme.models.mev) lognested() (in module biogeme.models.nested) lognested_mev_mu() (in module biogeme.models.nested) lognestedMevMu() (in module biogeme.models.nested) lognormalpdf() (in module biogeme.distributions) logzero (class in biogeme.expressions.logzero) lower_bound_dual_variable() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) lower_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) LRTuple (class in biogeme.tools.likelihood_ratio)

M

make_draw_specs() (biogeme.draws.factory.DrawFactory method) mapping (biogeme.function_output.NamedFunctionOutput attribute) max_iterations (biogeme.biogeme.BIOGEME property), [1] max_number_parameters_to_report (biogeme.biogeme.BIOGEME property), [1] maximum_attempts (biogeme.biogeme.BIOGEME property), [1] maximum_number_catalog_expressions (biogeme.biogeme.BIOGEME property), [1] maximum_number_parameters (biogeme.biogeme.BIOGEME property), [1] Mdcev (class in biogeme.mdcev.mdcev) mdcev_count() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) mdcev_row_split() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) MdcevConfiguration (class in biogeme.mdcev.mdcev) merge_audit_tuples() (in module biogeme.audit_tuple) message (biogeme.tools.likelihood_ratio.LRTuple attribute) mev() (in module biogeme.models.mev) mev_endogenous_sampling() (in module biogeme.models.mev) mev_endogenousSampling() (in module biogeme.models.mev) mev_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_prefix (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) mev_sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) Minus (class in biogeme.expressions.minus) missing_data (biogeme.biogeme.BIOGEME property), [1] mixedloglikelihood() (in module biogeme.loglikelihood) MLHS_anti() (in module biogeme.draws.native_draws) model_elements (biogeme.biogeme.BIOGEME property), [1] model_estimation() (in module biogeme.likelihood.model_estimation) model_name (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) model_names (biogeme.catalog.specification.Specification attribute) ModelElements (class in biogeme.model_elements.model_elements) modelName (biogeme.biogeme.BIOGEME property), [1] ModelNames (class in biogeme.tools.unique_ids) modify_controller() (biogeme.catalog.controller.Controller method) modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) module biogeme.assisted biogeme.audit_tuple biogeme.biogeme, [1] biogeme.biogeme_logging biogeme.calculator.function_call biogeme.calculator.hessian_calculation biogeme.calculator.multiple_formula biogeme.calculator.simple_formula biogeme.calculator.single_formula biogeme.catalog.catalog biogeme.catalog.catalog_iterator biogeme.catalog.central_controller biogeme.catalog.configuration biogeme.catalog.controller biogeme.catalog.generic_alt_specific_catalog biogeme.catalog.segmentation_catalog biogeme.catalog.specification biogeme.check_parameters biogeme.cnl biogeme.constants biogeme.data.mdcev_data biogeme.data.optima biogeme.data.swissmetro biogeme.database.audit biogeme.database.container biogeme.database.mdcev biogeme.database.panel biogeme.database.sampling biogeme.default_parameters biogeme.deprecated biogeme.dict_of_formulas biogeme.distributions biogeme.draws.factory biogeme.draws.generators biogeme.draws.management biogeme.draws.native_draws biogeme.exceptions biogeme.expressions.add_prefix_suffix biogeme.expressions.audit biogeme.expressions.base_expressions biogeme.expressions.belongs_to biogeme.expressions.beta_parameters biogeme.expressions.binary_expressions biogeme.expressions.binary_max biogeme.expressions.binary_min biogeme.expressions.collectors biogeme.expressions.comparison_expressions biogeme.expressions.conditional_sum biogeme.expressions.convert biogeme.expressions.cos biogeme.expressions.deprecated biogeme.expressions.derive biogeme.expressions.divide biogeme.expressions.draws biogeme.expressions.elem biogeme.expressions.elementary_expressions biogeme.expressions.elementary_types biogeme.expressions.exp biogeme.expressions.integrate biogeme.expressions.jax_utils biogeme.expressions.linear_utility biogeme.expressions.log biogeme.expressions.logical_and biogeme.expressions.logical_or biogeme.expressions.logit_expressions biogeme.expressions.logzero biogeme.expressions.minus biogeme.expressions.montecarlo biogeme.expressions.multiple_expressions biogeme.expressions.multiple_product biogeme.expressions.multiple_sum biogeme.expressions.named_expression biogeme.expressions.normalcdf biogeme.expressions.numeric_expressions biogeme.expressions.numeric_tools biogeme.expressions.panel_likelihood_trajectory biogeme.expressions.plus biogeme.expressions.power biogeme.expressions.power_constant biogeme.expressions.random_variable biogeme.expressions.rename_variables biogeme.expressions.sin biogeme.expressions.times biogeme.expressions.unary_expressions biogeme.expressions.unary_minus biogeme.expressions.validation biogeme.expressions.variable biogeme.expressions.visitor biogeme.expressions_registry biogeme.filenames biogeme.floating_point biogeme.function_output biogeme.likelihood.bootstrap biogeme.likelihood.linear_regression biogeme.likelihood.model_estimation biogeme.likelihood.negative_likelihood biogeme.loglikelihood biogeme.lsh biogeme.mdcev.database_utils biogeme.mdcev.gamma_profile biogeme.mdcev.generalized biogeme.mdcev.mdcev biogeme.mdcev.non_monotonic biogeme.mdcev.translated biogeme.model_elements.audit biogeme.model_elements.model_elements biogeme.models.boxcox biogeme.models.cnl biogeme.models.logit biogeme.models.mev biogeme.models.nested biogeme.models.ordered biogeme.models.piecewise biogeme.multiobjectives biogeme.nests biogeme.optimization biogeme.parameters biogeme.partition biogeme.results biogeme.results_processing.compilation biogeme.results_processing.estimation_results biogeme.results_processing.f12_output biogeme.results_processing.html_output biogeme.results_processing.latex_output biogeme.results_processing.pandas_output biogeme.results_processing.pareto biogeme.results_processing.raw_estimation_results biogeme.results_processing.recycle_pickle biogeme.results_processing.variance_covariance biogeme.sampling_of_alternatives.choice_set_generation biogeme.sampling_of_alternatives.generate_model biogeme.sampling_of_alternatives.sampling_context biogeme.sampling_of_alternatives.sampling_of_alternatives biogeme.second_derivatives biogeme.segmentation.database biogeme.segmentation.one_segmentation biogeme.segmentation.segmentation biogeme.segmentation.segmentation_context biogeme.segmentation.segmented_beta biogeme.tools.checks biogeme.tools.database biogeme.tools.derivatives biogeme.tools.ellipse biogeme.tools.files biogeme.tools.formatting biogeme.tools.likelihood_ratio biogeme.tools.primes biogeme.tools.serialize_numpy biogeme.tools.simulate biogeme.tools.time biogeme.tools.unique_ids biogeme.validation.cross_validation biogeme.validation.prepare_validation biogeme.validation.split_databases biogeme.validity biogeme.version

monte_carlo (biogeme.results_processing.estimation_results.EstimationResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) MonteCarlo (class in biogeme.expressions.montecarlo) MultipleExpression (class in biogeme.expressions.multiple_expressions) MultipleProduct (class in biogeme.expressions.multiple_product) MultipleSum (class in biogeme.expressions.multiple_sum) MultiRowEvaluator (class in biogeme.calculator.multiple_formula)

N

name (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.factory.DrawSpec attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.multiple_expressions.NamedExpression attribute) (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) (biogeme.parameters.NameSectionTuple attribute) (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute) named_function_output() (in module biogeme.expressions.named_expression) NamedCallableExpression (class in biogeme.calculator.function_call) NamedExpression (class in biogeme.expressions.multiple_expressions) NamedFunctionOutput (class in biogeme.function_output) NamedFunctionResult (class in biogeme.function_output) NamedOutputMixin (class in biogeme.function_output) names (biogeme.expressions_registry.ElementsTuple attribute) NameSectionTuple (class in biogeme.parameters) NegativeLikelihood (class in biogeme.likelihood.negative_likelihood) nest_param (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) nested() (in module biogeme.models.nested) nested_mev_mu() (in module biogeme.models.nested) nestedMevMu() (in module biogeme.models.nested) Nests (class in biogeme.nests) NestsForCrossNestedLogit (class in biogeme.nests) NestsForNestedLogit (class in biogeme.nests) NEVER (biogeme.second_derivatives.SecondDerivativesMode attribute) new_name (biogeme.expressions.rename_variables.OldNewName attribute) newton_linesearch_for_biogeme() (in module biogeme.optimization) newton_trust_region_for_biogeme() (in module biogeme.optimization) NonMonotonic (class in biogeme.mdcev.non_monotonic) normal_antithetic() (in module biogeme.draws.native_draws) normal_halton2() (in module biogeme.draws.native_draws)

normal_halton3() (in module biogeme.draws.native_draws) normal_halton5() (in module biogeme.draws.native_draws) normal_logpdf() (in module biogeme.distributions) normal_MLHS() (in module biogeme.draws.native_draws) normal_MLHS_anti() (in module biogeme.draws.native_draws) NormalCdf (class in biogeme.expressions.normalcdf) normalpdf() (in module biogeme.distributions) NotEqual (class in biogeme.expressions.comparison_expressions) NotImplementedError null_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) null_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1] num_columns() (biogeme.database.container.Database method) num_rows() (biogeme.database.container.Database method) num_runs (biogeme.tools.time.Timing property) number_of_alternatives (biogeme.mdcev.mdcev.Mdcev property) number_of_configurations() (biogeme.catalog.central_controller.CentralController method) number_of_draws (biogeme.biogeme.BIOGEME property), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_excluded_data (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_free_betas (biogeme.expressions_registry.ExpressionRegistry property) number_of_free_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_jobs (biogeme.biogeme.BIOGEME property), [1] number_of_neighbors (biogeme.biogeme.BIOGEME property), [1] number_of_observations (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_random_variables (biogeme.expressions_registry.ExpressionRegistry property) number_of_segments() (biogeme.partition.Partition method) number_of_threads (biogeme.biogeme.BIOGEME property), [1] number_unknown_parameters() (biogeme.biogeme.BIOGEME method), [1] Numeric (class in biogeme.expressions.numeric_expressions) numerically_safe (biogeme.biogeme.BIOGEME property), [1]

O

observation_suffix() (in module biogeme.database.panel) old_name (biogeme.expressions.rename_variables.OldNewName attribute) OldNewName (class in biogeme.expressions.rename_variables) on_database_update() (biogeme.model_elements.model_elements.ModelElements method) OneNestForCrossNestedLogit (class in biogeme.nests) OneNestForNestedLogit (class in biogeme.nests) OneSegmentation (class in biogeme.segmentation.one_segmentation) only_robust_stats (biogeme.biogeme.BIOGEME property), [1] optimal_consumption() (biogeme.mdcev.mdcev.Mdcev method) optimal_consumption_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method)

optimization() (in module biogeme.likelihood.model_estimation) optimization_algorithm (biogeme.biogeme.BIOGEME property), [1] optimization_messages (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) optimization_parameters (biogeme.biogeme.BIOGEME property), [1] Or (class in biogeme.expressions.logical_or) ordered_likelihood() (in module biogeme.models.ordered) ordered_likelihood_from_thresholds() (in module biogeme.models.ordered) ordered_logit() (in module biogeme.models.ordered) ordered_logit_from_thresholds() (in module biogeme.models.ordered) ordered_probit() (in module biogeme.models.ordered) ordered_probit_from_thresholds() (in module biogeme.models.ordered) outside_good_index (biogeme.mdcev.mdcev.Mdcev property)

P

panel() (biogeme.database.container.Database method) PanelDatabase (class in biogeme.database.panel) PanelLikelihoodTrajectory (class in biogeme.expressions.panel_likelihood_trajectory) parameter_exists() (biogeme.parameters.Parameters method) parameter_names (biogeme.parameters.Parameters property) Parameters (class in biogeme.parameters) parameters_in_section() (biogeme.parameters.Parameters method) ParameterTuple (class in biogeme.default_parameters) pareto_optimal() (in module biogeme.results_processing.pareto) ParetoPostProcessing (class in biogeme.assisted) parse_boolean() (in module biogeme.parameters) Partition (class in biogeme.partition) pickle_to_yaml() (in module biogeme.results_processing.recycle_pickle)

piecewise_as_variable() (in module biogeme.models.piecewise) piecewise_formula() (in module biogeme.models.piecewise) piecewise_function() (in module biogeme.models.piecewise) piecewise_variables() (in module biogeme.models.piecewise) plot() (biogeme.assisted.ParetoPostProcessing method) Plus (class in biogeme.expressions.plus) Power (class in biogeme.expressions.power) PowerConstant (class in biogeme.expressions.power_constant) prefix_suffix_variable_name_handler() (in module biogeme.expressions.add_prefix_suffix) prepare_operators() (biogeme.catalog.central_controller.CentralController method) price_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) print_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) print_list_of_parameters() (in module biogeme.default_parameters) process_row() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method)

Q

quick_estimate() (biogeme.biogeme.BIOGEME method), [1]

R

RANDOM_VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) random_variables (biogeme.expressions_registry.ExpressionRegistry property) random_variables_indices (biogeme.expressions_registry.ExpressionRegistry property) RandomNumberGeneratorTuple (class in biogeme.draws.native_draws) RandomVariable (class in biogeme.expressions.random_variable) RAO_CRAMER (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) rao_cramer_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) RawEstimationResults (class in biogeme.results_processing.raw_estimation_results) RawResults (class in biogeme.results_processing.recycle_pickle) read_data() (in module biogeme.data.mdcev_data) (in module biogeme.data.optima) (in module biogeme.data.swissmetro) read_file() (biogeme.parameters.Parameters method) read_pickle_biogeme() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_10() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_11() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_12() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_13() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_14() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_7() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_8() (in module biogeme.results_processing.recycle_pickle) reason (biogeme.validity.Validity attribute) recursive_construct_jax_function() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method)

recursive_construct_jax_function_beta() (biogeme.expressions.derive.Derive method) recursive_construct_jax_function_variable() (biogeme.expressions.derive.Derive method) reestimate() (biogeme.assisted.ParetoPostProcessing method) register() (biogeme.expressions.collectors.ExpressionCollector method) (biogeme.expressions.visitor.ExpressionVisitor method) register_listener() (biogeme.database.container.Database method) regression_likelihood() (in module biogeme.likelihood.linear_regression) regression_loglikelihood() (in module biogeme.likelihood.linear_regression) remove() (biogeme.database.container.Database method) (biogeme.tools.files.TemporaryFile method) remove_column() (biogeme.database.container.Database method) remove_rows() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method) rename_all_variables() (in module biogeme.expressions.rename_variables) rename_and_renumber() (in module biogeme.results_processing.latex_output) rename_elementary() (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) rename_variable_handler() (in module biogeme.expressions.rename_variables) report_array() (biogeme.biogeme.BIOGEME method), [1] reporting() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) requires_draws (biogeme.expressions_registry.ExpressionRegistry property) requires_draws() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) reset_indices() (biogeme.database.container.Database method) reset_selection() (biogeme.catalog.central_controller.CentralController method) (biogeme.catalog.controller.Controller method) retrieve_saved_estimates() (biogeme.biogeme.BIOGEME method), [1] rho_bar_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_bar_square_null (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_null (biogeme.results_processing.estimation_results.EstimationResults property) ROBUST (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) robust_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) run() (biogeme.assisted.AssistedSpecification method)

S

safe_beta_id (biogeme.expressions.beta_parameters.Beta property) safe_deserialize_array() (in module biogeme.tools.serialize_numpy) safe_draw_id (biogeme.expressions.draws.Draws property) safe_rv_id (biogeme.expressions.integrate.IntegrateNormal property) (biogeme.expressions.random_variable.RandomVariable property) safe_serialize_array() (in module biogeme.tools.serialize_numpy) safe_variable_id (biogeme.expressions.variable.Variable property) sample_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_and_merge() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) sample_mev_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_panel_with_replacement() (in module biogeme.database.sampling) sample_size (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) sample_with_replacement() (in module biogeme.database.sampling) sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) SamplingContext (class in biogeme.sampling_of_alternatives.sampling_context) SamplingOfAlternatives (class in biogeme.sampling_of_alternatives.sampling_of_alternatives) save_iterations (biogeme.biogeme.BIOGEME property), [1] save_iterations() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) save_validation_results (biogeme.biogeme.BIOGEME property), [1] scale_column() (biogeme.database.container.Database method) scipy() (in module biogeme.optimization) second_derivatives (biogeme.biogeme.BIOGEME property), [1] SecondDerivativesMode (class in biogeme.second_derivatives) section (biogeme.default_parameters.ParameterTuple attribute) (biogeme.parameters.NameSectionTuple attribute) sections (biogeme.parameters.Parameters property) sections_from_name() (biogeme.parameters.Parameters method) seed (biogeme.biogeme.BIOGEME property), [1] Segmentation (class in biogeme.segmentation.segmentation) segmentation_catalogs() (in module biogeme.catalog.segmentation_catalog) segmented_beta() (biogeme.segmentation.segmentation.Segmentation method) (in module biogeme.segmentation.segmented_beta) segmented_code() (biogeme.segmentation.segmentation.Segmentation method) SegmentedParameters (class in biogeme.catalog.segmentation_catalog) selected() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_expression() (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_name() (biogeme.expressions.multiple_expressions.MultipleExpression method) SelectedConfigurationsIterator (class in biogeme.catalog.catalog_iterator) selection (biogeme.catalog.configuration.SelectionTuple attribute) selections (biogeme.catalog.configuration.Configuration property) SelectionTuple (class in biogeme.catalog.configuration)

serialize_to_yaml() (in module biogeme.results_processing.raw_estimation_results) set_configuration() (biogeme.catalog.central_controller.CentralController method) set_configuration_from_id() (biogeme.catalog.central_controller.CentralController method) set_controller() (biogeme.catalog.central_controller.CentralController method) set_index() (biogeme.catalog.controller.Controller method) set_maximum_number_of_observations_per_individual() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) set_name() (biogeme.catalog.controller.Controller method) set_of_controllers() (biogeme.catalog.configuration.Configuration method) set_random_init_values() (biogeme.biogeme.BIOGEME method), [1] set_several_parameters() (biogeme.parameters.Parameters method) set_specific_id() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.multiple_expressions.MultipleExpression method) set_value() (biogeme.parameters.Parameters method) short_summary() (biogeme.results_processing.estimation_results.EstimationResults method) simple_bounds_newton_algorithm_for_biogeme() (in module biogeme.optimization) simulate() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.simulate) simulated_values (biogeme.validation.cross_validation.ValidationResult attribute) sin (class in biogeme.expressions.sin) sin_phi (biogeme.tools.ellipse.Ellipse attribute) smallest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) smallest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) solution (biogeme.likelihood.model_estimation.AlgorithmResults attribute) sorting_utility_one_alternative() (biogeme.mdcev.generalized.Generalized method) Specification (class in biogeme.catalog.specification) split() (in module biogeme.validation.prepare_validation) split_databases() (in module biogeme.validation.split_databases) split_validation_sets() (in module biogeme.database.sampling) statistic (biogeme.tools.likelihood_ratio.LRTuple attribute) status (biogeme.validity.Validity attribute) steptol (biogeme.biogeme.BIOGEME property), [1] StratumTuple (class in biogeme.sampling_of_alternatives.sampling_context) subset (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) suggest_scaling() (biogeme.database.container.Database method) sum_of_utilities() (biogeme.mdcev.mdcev.Mdcev method) suppress_logs() (in module biogeme.biogeme_logging) symm_halton2() (in module biogeme.draws.native_draws) symm_halton3() (in module biogeme.draws.native_draws) symm_halton5() (in module biogeme.draws.native_draws) symm_MLHS() (in module biogeme.draws.native_draws) symm_MLHS_anti() (in module biogeme.draws.native_draws) symm_uniform() (in module biogeme.draws.native_draws) symm_uniform_antithetic() (in module biogeme.draws.native_draws)

T

TemporaryFile (class in biogeme.tools.files) term (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) the_dimension (biogeme.likelihood.negative_likelihood.NegativeLikelihood attribute) the_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) threshold (biogeme.tools.likelihood_ratio.LRTuple attribute) time_function() (biogeme.tools.time.Timing method) timedelta_constructor() (in module biogeme.results_processing.raw_estimation_results) timedelta_representer() (in module biogeme.results_processing.raw_estimation_results) Times (class in biogeme.expressions.times) Timing (class in biogeme.tools.time) tolerance (biogeme.biogeme.BIOGEME property), [1] total_mev_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property)

total_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) transformed_utility() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Translated (class in biogeme.mdcev.translated) triangularpdf() (in module biogeme.distributions) two_controllers() (biogeme.catalog.central_controller.CentralController method) type (biogeme.default_parameters.ParameterTuple attribute) TypeOfElementaryExpression (class in biogeme.expressions.elementary_types) types_of_draws (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

U

UnaryMinus (class in biogeme.expressions.unary_minus) UnaryOperator (class in biogeme.expressions.unary_expressions) uniform_antithetic() (in module biogeme.draws.native_draws) uniformpdf() (in module biogeme.distributions) unique_entry() (biogeme.function_output.DisaggregateFunctionOutput method) unique_product() (in module biogeme.tools.unique_ids) upper_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) use_jit (biogeme.biogeme.BIOGEME property), [1] user_defined_validity_check (biogeme.catalog.specification.Specification attribute) user_notes (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

utility_expression_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) utility_function (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method)

V

validate() (biogeme.biogeme.BIOGEME method), [1] validate_and_convert() (in module biogeme.expressions.convert) validate_dict_types() (in module biogeme.tools.checks) validate_expression_type() (in module biogeme.expressions.validation) validate_forecast() (biogeme.mdcev.mdcev.Mdcev method) validate_partition() (biogeme.partition.Partition method) validate_segments() (biogeme.partition.Partition method) validation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) validation() (biogeme.mdcev.mdcev.Mdcev method) validation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) validation_one_alternative() (biogeme.mdcev.mdcev.Mdcev method) validation_one_alternative_one_consumption() (biogeme.mdcev.mdcev.Mdcev method) ValidationResult (class in biogeme.validation.cross_validation)

Validity (class in biogeme.validity) value (biogeme.default_parameters.ParameterTuple attribute) (biogeme.expressions.numeric_expressions.Numeric attribute) ValueOutOfRange VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) Variable (class in biogeme.expressions.variable) variables (biogeme.expressions.linear_utility.LinearUtility attribute) (biogeme.expressions_registry.ExpressionRegistry property) variables_indices (biogeme.expressions_registry.ExpressionRegistry property) variance_covariance_missing (biogeme.results_processing.estimation_results.EstimationResults property) verify_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) version (biogeme.biogeme.BIOGEME property), [1] visit() (biogeme.expressions.visitor.ExpressionVisitor method)

W

walk() (biogeme.expressions.collectors.ExpressionCollector method) warm_up_runs (biogeme.tools.time.Timing property) warnings (biogeme.audit_tuple.AuditTuple attribute) weight (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property)

weight_name (biogeme.biogeme.BIOGEME attribute), [1] write_f12() (biogeme.results_processing.estimation_results.EstimationResults method) write_latex() (biogeme.results_processing.estimation_results.EstimationResults method)

X

x (biogeme.expressions.linear_utility.LinearTermTuple attribute)

Z

zero_one() (in module biogeme.check_parameters)