Index

A

add() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) add_alphas() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) add_column() (biogeme.database.container.Database method) add_note() (biogeme.profiling.jax_profile.JaxExecutionProfile method) add_parameter() (biogeme.parameters.Parameters method) add_prefix_suffix_to_all_variables() (in module biogeme.expressions.add_prefix_suffix) add_suffix_to_all_variables() (biogeme.expressions.multiple_expressions.MultipleExpression method) add_trailing_zero() (in module biogeme.results_processing.latex_output) AIC_BIC_dimension() (in module biogeme.multiobjectives) aic_bic_dimension() (in module biogeme.multiobjectives) akaike_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) algo_parameters (biogeme.biogeme.BIOGEME property), [1] algorithm_has_converged (biogeme.results_processing.estimation_results.EstimationResults property) AlgorithmResults (class in biogeme.likelihood.model_estimation) all_alpha_fixed() (biogeme.nests.OneNestForCrossNestedLogit method) all_alphas_fixed() (biogeme.nests.NestsForCrossNestedLogit method) all_configurations() (biogeme.catalog.controller.Controller method) all_parameters_dict (biogeme.parameters.Parameters attribute) all_parameters_tuple() (in module biogeme.default_parameters) all_results (biogeme.catalog.specification.Specification attribute) ALT (biogeme.expressions.bayesian.Dimension attribute) alternatives (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ANALYTICAL (biogeme.second_derivatives.SecondDerivativesMode attribute) analytical_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) analytical_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) And (class in biogeme.expressions.logical_and) are_derivatives_available (biogeme.results_processing.estimation_results.EstimationResults property)

array_metadata (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) arviz_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) as_list() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) assert_sets_equal() (in module biogeme.tools.checks) AssistedSpecification (class in biogeme.assisted) attributes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) audit() (biogeme.model_elements.model_elements.ModelElements method) audit_belongsto() (in module biogeme.expressions.audit) audit_chosen_alternative() (in module biogeme.model_elements.audit) audit_dataframe() (in module biogeme.database.audit) audit_default() (in module biogeme.expressions.audit) audit_draws() (in module biogeme.expressions.audit) audit_expression() (in module biogeme.expressions.audit) audit_integrate() (in module biogeme.expressions.audit) audit_loglogit() (in module biogeme.expressions.audit) audit_montecarlo() (in module biogeme.expressions.audit) audit_panel() (in module biogeme.model_elements.audit) audit_panel_dataframe() (in module biogeme.database.audit) audit_randomvariable() (in module biogeme.expressions.audit) audit_variables() (in module biogeme.model_elements.audit) AuditTuple (class in biogeme.audit_tuple) av (biogeme.expressions.logit_expressions.LogLogit attribute) availabilities (biogeme.expressions.base_expressions.LogitTuple attribute) available (biogeme.database.audit.ChosenAvailable attribute) axis_one (biogeme.tools.ellipse.Ellipse attribute) axis_two (biogeme.tools.ellipse.Ellipse attribute)

B

backend (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) BAYESIAN (biogeme.latent_variables.context.EstimationMode attribute) bayesian_cross_validate_model() (in module biogeme.validation.cross_validation) bayesian_draws (biogeme.biogeme.BIOGEME property) BAYESIAN_DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) bayesian_estimation() (biogeme.biogeme.BIOGEME method), [1] bayesian_estimation_non_panel() (biogeme.biogeme.BIOGEME method), [1] bayesian_estimation_or_load_summary() (biogeme.biogeme.BIOGEME method), [1] bayesian_estimation_panel() (biogeme.biogeme.BIOGEME method), [1] bayesian_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) BayesianResults (class in biogeme.bayesian_estimation.bayesian_results) BayesianResultsSummary (class in biogeme.bayesian_estimation.bayesian_results_summary) BelongsTo (class in biogeme.expressions.belongs_to) BenchmarkCaseResult (class in biogeme.profiling.benchmark) BenchmarkSeriesResult (class in biogeme.profiling.benchmark) best_draw_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) best_iteration (biogeme.biogeme.BIOGEME attribute), [1] BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) beta (biogeme.expressions.linear_utility.LinearTermTuple attribute) Beta (class in biogeme.expressions.beta_parameters) (class in biogeme.results_processing.recycle_pickle) beta_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_expression() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_name() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_names (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) beta_ref_code() (biogeme.segmentation.segmentation.Segmentation method) beta_values (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) betas (biogeme.expressions.linear_utility.LinearUtility attribute) bfgs_linesearch_for_biogeme() (in module biogeme.optimization) bfgs_trust_region_for_biogeme() (in module biogeme.optimization) bhhh (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BHHH (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bhhh_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bhhhs (biogeme.function_output.DisaggregateFunctionOutput attribute) BinaryMax (class in biogeme.expressions.binary_max) BinaryMin (class in biogeme.expressions.binary_min) BinaryOperator (class in biogeme.expressions.binary_expressions) bio_bfgs() (in module biogeme.optimization) bio_newton() (in module biogeme.optimization) bioDraws() (in module biogeme.expressions.deprecated) BIOGEME (class in biogeme.biogeme), [1] biogeme.assisted module biogeme.audit_tuple module biogeme.bayesian_estimation.bayesian_results module biogeme.bayesian_estimation.bayesian_results_summary module biogeme.bayesian_estimation.check_shape module biogeme.bayesian_estimation.html_output module biogeme.bayesian_estimation.pandas_output module biogeme.bayesian_estimation.raw_bayesian_results module biogeme.bayesian_estimation.sampling module biogeme.bayesian_estimation.sampling_strategy module biogeme.biogeme module, [1] biogeme.biogeme_logging module biogeme.catalog.catalog module biogeme.catalog.catalog_iterator module biogeme.catalog.central_controller module biogeme.catalog.configuration module biogeme.catalog.controller module biogeme.catalog.generic_alt_specific_catalog module biogeme.catalog.segmentation_catalog module biogeme.catalog.specification module biogeme.check_parameters module biogeme.cnl module biogeme.constants module biogeme.data.mdcev_data module biogeme.data.optima module biogeme.data.swissmetro module biogeme.database.audit module biogeme.database.container module biogeme.database.mdcev module biogeme.database.panel module biogeme.database.panel_map module biogeme.database.sampling module biogeme.default_parameters module biogeme.deprecated module biogeme.dict_of_formulas module biogeme.distributions module biogeme.draws.factory module biogeme.draws.generators module biogeme.draws.management module biogeme.draws.native_draws module biogeme.draws.pymc_draws module biogeme.exceptions module biogeme.expressions.add_prefix_suffix module biogeme.expressions.audit module biogeme.expressions.base_expressions module biogeme.expressions.bayesian module biogeme.expressions.belongs_to module biogeme.expressions.beta_parameters module biogeme.expressions.binary_expressions module biogeme.expressions.binary_max module biogeme.expressions.binary_min module biogeme.expressions.boxcox module biogeme.expressions.collectors module biogeme.expressions.comparison_expressions module biogeme.expressions.conditional_sum module biogeme.expressions.convert module biogeme.expressions.cos module biogeme.expressions.deprecated module biogeme.expressions.derive module biogeme.expressions.distributed_parameter module biogeme.expressions.divide module biogeme.expressions.draws module biogeme.expressions.elem module biogeme.expressions.elementary_expressions module biogeme.expressions.elementary_types module biogeme.expressions.exp module biogeme.expressions.expm1 module biogeme.expressions.individual_draws module biogeme.expressions.integrate module biogeme.expressions.jax_utils module biogeme.expressions.linear_utility module biogeme.expressions.log module biogeme.expressions.logical_and module biogeme.expressions.logical_or module biogeme.expressions.logit_expressions module biogeme.expressions.logzero module biogeme.expressions.minus module biogeme.expressions.montecarlo module biogeme.expressions.multiple_expressions module biogeme.expressions.multiple_product module biogeme.expressions.multiple_sum module biogeme.expressions.named_expression module biogeme.expressions.normalcdf module biogeme.expressions.numeric_expressions module biogeme.expressions.numeric_tools module biogeme.expressions.ordered module biogeme.expressions.panel_likelihood_trajectory module biogeme.expressions.panel_log_likelihood module biogeme.expressions.plus module biogeme.expressions.power module biogeme.expressions.power_constant module biogeme.expressions.prepare_for_panel module biogeme.expressions.random_variable module biogeme.expressions.rename_variables module biogeme.expressions.set_panel_id module biogeme.expressions.sin module biogeme.expressions.times module

biogeme.expressions.unary_expressions module biogeme.expressions.unary_minus module biogeme.expressions.validation module biogeme.expressions.variable module biogeme.expressions.visitor module biogeme.expressions_registry module biogeme.filenames module biogeme.floating_point module biogeme.function_output module biogeme.jax_calculator.function_call module biogeme.jax_calculator.multiple_formula module biogeme.jax_calculator.simple_formula module biogeme.jax_calculator.single_formula module biogeme.latent_variables.biogeme_builder module biogeme.latent_variables.context module biogeme.latent_variables.html_report module biogeme.latent_variables.io module biogeme.latent_variables.latex_report module biogeme.latent_variables.model_spec module biogeme.latent_variables.naming module biogeme.latent_variables.normalization_plan module biogeme.latent_variables.normalization_refs module biogeme.latent_variables.python_generator module biogeme.latent_variables.resolved module biogeme.latent_variables.resolver module biogeme.latent_variables.tex_utils module biogeme.latent_variables.validation module biogeme.likelihood.bootstrap module biogeme.likelihood.linear_regression module biogeme.likelihood.model_estimation module biogeme.likelihood.negative_likelihood module biogeme.loglikelihood module biogeme.lsh module biogeme.mdcev.database_utils module biogeme.mdcev.gamma_profile module biogeme.mdcev.generalized module biogeme.mdcev.mdcev module biogeme.mdcev.non_monotonic module biogeme.mdcev.translated module biogeme.model_elements.audit module biogeme.model_elements.database_adapter module biogeme.model_elements.model_elements module biogeme.models.boxcox module biogeme.models.cnl module biogeme.models.logit module biogeme.models.mev module biogeme.models.nested module biogeme.models.ordered module biogeme.models.piecewise module biogeme.multiobjectives module biogeme.nests module biogeme.optimization module biogeme.parameters module biogeme.partition module biogeme.profiling.benchmark module biogeme.profiling.environment module biogeme.profiling.jax_profile module biogeme.profiling.timing module biogeme.pymc_calculator module biogeme.results module biogeme.results_processing.compilation module biogeme.results_processing.estimation_results module biogeme.results_processing.f12_output module biogeme.results_processing.html_output module biogeme.results_processing.latex_output module biogeme.results_processing.pandas_output module biogeme.results_processing.pareto module biogeme.results_processing.raw_estimation_results module biogeme.results_processing.recycle_pickle module biogeme.results_processing.variance_covariance module biogeme.sampling_of_alternatives.choice_set_generation module biogeme.sampling_of_alternatives.generate_model module biogeme.sampling_of_alternatives.sampling_context module biogeme.sampling_of_alternatives.sampling_of_alternatives module biogeme.second_derivatives module biogeme.segmentation.database module biogeme.segmentation.one_segmentation module biogeme.segmentation.segmentation module biogeme.segmentation.segmentation_context module biogeme.segmentation.segmented_beta module biogeme.tools.checks module biogeme.tools.database module biogeme.tools.derivatives module biogeme.tools.ellipse module biogeme.tools.files module biogeme.tools.formatting module biogeme.tools.jax_multicore module biogeme.tools.likelihood_ratio module biogeme.tools.pandas_to_latex module biogeme.tools.primes module biogeme.tools.pymc_utils module biogeme.tools.serialize_numpy module biogeme.tools.simulate module biogeme.tools.time module biogeme.tools.timeit_context_manager module biogeme.tools.timeit_decorator module biogeme.tools.unique_ids module biogeme.tools.yaml module biogeme.validation.cross_validation module biogeme.validation.prepare_validation module biogeme.validation.split_databases module biogeme.validity module biogeme.version module biogeme_file_name (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) BiogemeError BiogemeUnpickler (class in biogeme.results_processing.recycle_pickle) bioLinearUtility() (in module biogeme.expressions.deprecated) bioMax() (in module biogeme.expressions.deprecated) bioMin() (in module biogeme.expressions.deprecated) bioMultSum() (in module biogeme.expressions.deprecated) bioNormalCdf() (in module biogeme.expressions.deprecated) bioResults (class in biogeme.results) block_until_ready() (in module biogeme.profiling.timing) bootstrap (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BOOTSTRAP (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bootstrap() (in module biogeme.likelihood.bootstrap) bootstrap_sample() (biogeme.database.container.Database method) bootstrap_samples (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) bootstrap_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) bootstrap_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) BOUNDED_BETA (biogeme.latent_variables.resolved.ParameterCreationKind attribute) bounds (biogeme.expressions_registry.ExpressionRegistry property) BoxCox (class in biogeme.expressions.boxcox) boxcox() (in module biogeme.models.boxcox) broadcast() (biogeme.expressions_registry.ExpressionRegistry method) build_biogeme_model() (in module biogeme.latent_variables.biogeme_builder) build_contiguous_panel_map() (in module biogeme.database.panel_map) build_count (biogeme.profiling.jax_profile.FunctionProfile attribute) build_linear_terms() (in module biogeme.likelihood.linear_regression) build_normalized_formula() (in module biogeme.likelihood.linear_regression) build_ordered_thresholds() (in module biogeme.models.ordered) build_registry() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) build_vectorized_function() (in module biogeme.expressions.jax_utils) BuildContext (class in biogeme.latent_variables.context) BuiltBiogemeModel (class in biogeme.latent_variables.biogeme_builder)

C

calc_p_value() (in module biogeme.results_processing.estimation_results) calculate_baseline_utility() (biogeme.mdcev.mdcev.Mdcev method) calculate_init_likelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_inverse_of_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_inverse_of_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_likelihood (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.biogeme.BIOGEME property) calculate_log_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_log_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_loo (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.biogeme.BIOGEME property) calculate_mu_utility() (biogeme.mdcev.non_monotonic.NonMonotonic method) calculate_null_loglikelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_prime_numbers() (in module biogeme.tools.primes) calculate_single_formula() (in module biogeme.jax_calculator.single_formula) calculate_single_formula_from_expression() (in module biogeme.jax_calculator.single_formula) calculate_test() (biogeme.results_processing.estimation_results.EstimationResults method) calculate_utilities() (biogeme.mdcev.mdcev.Mdcev method) calculate_waic (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.biogeme.BIOGEME property) calculates_correlation_matrix() (in module biogeme.results_processing.estimation_results) calculates_estimated_values() (biogeme.segmentation.segmentation.Segmentation method) calculating_second_derivatives (biogeme.biogeme.BIOGEME property) call_count (biogeme.profiling.jax_profile.FunctionProfile attribute) CallableExpression (class in biogeme.jax_calculator.function_call) Catalog (class in biogeme.catalog.catalog) catalog_name (biogeme.expressions.multiple_expressions.CatalogItem attribute) catalog_size() (biogeme.expressions.multiple_expressions.MultipleExpression method) CatalogItem (class in biogeme.expressions.multiple_expressions) categories (biogeme.latent_variables.model_spec.LikertType attribute) (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) center_x (biogeme.tools.ellipse.Ellipse attribute) center_y (biogeme.tools.ellipse.Ellipse attribute) central_controller (biogeme.catalog.specification.Specification attribute) CentralController (class in biogeme.catalog.central_controller) chain_method (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) chains (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property) change_init_values() (biogeme.biogeme.BIOGEME method), [1] (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.multiple_expressions.MultipleExpression method) check (biogeme.default_parameters.ParameterTuple attribute) check_algo_name() (in module biogeme.check_parameters) check_availability_of_chosen_alt() (in module biogeme.database.audit) check_calculating_second_derivatives() (in module biogeme.check_parameters) check_consistency_of_named_dicts() (in module biogeme.tools.checks) check_derivatives() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.derivatives) check_expression() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_for_invalid_yaml_values() (in module biogeme.tools.yaml) check_intersection() (biogeme.nests.NestsForNestedLogit method) check_mev_partition() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_names() (biogeme.nests.Nests method) check_parameter_value() (biogeme.parameters.Parameters static method) check_partition() (biogeme.nests.NestsForNestedLogit method) (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_sampling_strategy() (in module biogeme.check_parameters) check_shape() (in module biogeme.bayesian_estimation.check_shape) check_union() (biogeme.nests.Nests method) check_valid_alternatives() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method)

check_validity() (biogeme.nests.NestsForCrossNestedLogit method) (in module biogeme.dict_of_formulas) CheckDerivativesResults (class in biogeme.tools.derivatives) children (biogeme.expressions.base_expressions.Expression attribute) choice (biogeme.expressions.base_expressions.LogitTuple attribute) (biogeme.expressions.logit_expressions.LogLogit attribute) choice_availability_statistics() (in module biogeme.database.audit) choice_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ChoiceSetsGeneration (class in biogeme.sampling_of_alternatives.choice_set_generation) chosen (biogeme.database.audit.ChosenAvailable attribute) ChosenAvailable (class in biogeme.database.audit) cnl() (in module biogeme.models.cnl) cnl_avail() (in module biogeme.models.cnl) cnl_CDF() (in module biogeme.cnl) cnl_cdf() (in module biogeme.cnl) cnl_G() (in module biogeme.cnl) cnl_g() (in module biogeme.cnl) cnl_nests (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) cnlmu() (in module biogeme.models.cnl) code (biogeme.latent_variables.validation.Diagnostic attribute) coefficient (biogeme.latent_variables.resolved.ResolvedLinearTerm attribute) collect_init_values() (in module biogeme.expressions.collectors) column_exists() (biogeme.database.container.Database method) combined_variables (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) compare_parameters() (in module biogeme.results_processing.latex_output) ComparisonOperator (class in biogeme.expressions.comparison_expressions) compile_estimation_results() (in module biogeme.results_processing.compilation) compile_results_in_directory() (in module biogeme.results_processing.compilation) CompiledFormulaEvaluator (class in biogeme.jax_calculator.single_formula) complete_dict_of_free_beta_values() (biogeme.expressions_registry.ExpressionRegistry method) condition (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) condition_number (biogeme.results_processing.estimation_results.EstimationResults property) conditional_likelihood (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) conditional_log_likelihood (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) ConditionalSum (class in biogeme.expressions.conditional_sum) ConditionalTermTuple (class in biogeme.expressions.conditional_sum) confidence_intervals() (biogeme.biogeme.BIOGEME method), [1] config_id (biogeme.catalog.specification.Specification property) Configuration (class in biogeme.catalog.configuration) configure_expression() (biogeme.catalog.specification.Specification method) ConflictPolicy (class in biogeme.latent_variables.normalization_plan) construction_kind (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) contains_log_likelihood() (biogeme.biogeme.BIOGEME method), [1] contains_python_tags() (in module biogeme.tools.yaml) ContiguousPanelMap (class in biogeme.database.panel_map) controller (biogeme.catalog.configuration.SelectionTuple attribute) Controller (class in biogeme.catalog.controller) controller_size() (biogeme.catalog.controller.Controller method) convergence (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) convert_random_generator_tuple() (in module biogeme.draws.native_draws) convert_to_dict() (in module biogeme.function_output) cores (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) correlation() (biogeme.nests.NestsForCrossNestedLogit method) (biogeme.nests.NestsForNestedLogit method) cos (class in biogeme.expressions.cos) cos_phi (biogeme.tools.ellipse.Ellipse attribute) count_cpu_devices() (in module biogeme.tools.jax_multicore) count_number_of_groups() (in module biogeme.tools.database) count_number_of_specifications() (in module biogeme.catalog.central_controller) countNumberOfGroups() (in module biogeme.tools.database) counts (biogeme.database.panel_map.ContiguousPanelMap attribute) covariance() (biogeme.nests.NestsForCrossNestedLogit method) create_backup() (in module biogeme.tools.files) create_function_simple_expression() (in module biogeme.jax_calculator.simple_formula) creation_kind (biogeme.latent_variables.resolved.ResolvedParameter attribute) cross_validate_model() (in module biogeme.validation.cross_validation) CrossVariableTuple (class in biogeme.sampling_of_alternatives.sampling_context) current_name() (biogeme.catalog.controller.Controller method) CutpointKind (class in biogeme.latent_variables.resolved) cutpoints (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute)

D

data_jax (biogeme.database.container.Database property) data_name (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) database (biogeme.catalog.specification.Specification attribute) (biogeme.expressions_registry.ExpressionRegistry attribute) (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) Database (class in biogeme.database.container) dataframe (biogeme.database.container.Database property) dataframe_to_latex_decimal() (in module biogeme.tools.pandas_to_latex) decreased_controller() (biogeme.catalog.central_controller.CentralController method) deep_flat_copy() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) default() (biogeme.latent_variables.context.BuildContext static method) default_specification() (biogeme.catalog.specification.Specification class method) DefaultNamingPolicy (class in biogeme.latent_variables.naming) define_new_variables() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method)

define_variable() (biogeme.database.container.Database method) DefineVariable() (biogeme.database.container.Database method) delegate_to_selected() (in module biogeme.expressions.multiple_expressions) deprecated() (in module biogeme.deprecated) deprecated_parameters() (in module biogeme.deprecated) deprecated_wrapper() (in module biogeme.expressions.deprecated) derivative_utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Derive (class in biogeme.expressions.derive) DERIVED (biogeme.latent_variables.resolved.CutpointKind attribute) describe() (biogeme.catalog.specification.Specification method) describe_strategies() (in module biogeme.bayesian_estimation.sampling_strategy) description (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) description_of_native_draws() (in module biogeme.draws.native_draws) deserialize_from_yaml() (in module biogeme.results_processing.raw_estimation_results) Diagnostic (class in biogeme.latent_variables.validation) diagnostic_figure_references (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) diagnostics (biogeme.latent_variables.validation.ValidationResult attribute) dict_of_alpha (biogeme.nests.OneNestForCrossNestedLogit attribute) dict_of_expressions (biogeme.expressions.elem.Elem attribute) Dimension (class in biogeme.expressions.bayesian) dimension() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) DisaggregateFunctionOutput (class in biogeme.function_output) disclaimer (biogeme.latent_variables.resolved.ResolvedNormalizationSummary attribute) DiscreteSegmentationTuple (class in biogeme.segmentation.segmentation_context) display_messages() (in module biogeme.audit_tuple) DistributedParameter (class in biogeme.expressions.distributed_parameter) Divide (class in biogeme.expressions.divide) documentation (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) dogleg (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) draw_confidence_ellipse() (in module biogeme.results_processing.latex_output) draw_dimension (biogeme.expressions.draws.Draws property) draw_ellipse() (in module biogeme.tools.ellipse) draw_name (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) draw_type (biogeme.draws.factory.DrawSpec attribute) (biogeme.latent_variables.context.BuildContext attribute) (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) draw_types() (biogeme.expressions_registry.ExpressionRegistry method) DrawFactory (class in biogeme.draws.factory) draws (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) draws (biogeme.expressions_registry.ExpressionRegistry property) Draws (class in biogeme.expressions.draws) draws_indices (biogeme.expressions_registry.ExpressionRegistry property) draws_jax (biogeme.draws.management.DrawsManagement property) draws_management (biogeme.model_elements.model_elements.ModelElements property) draws_names (biogeme.expressions_registry.ExpressionRegistry property) draws_processing_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) DrawsManagement (class in biogeme.draws.management) DrawSpec (class in biogeme.draws.factory) dummy_database() (biogeme.database.container.Database class method) dump() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) dump_file() (biogeme.parameters.Parameters method) dump_yaml() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) dump_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults method) DuplicateError

E

effective_sample_size_bulk (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) effective_sample_size_tail (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) eigen_structure() (biogeme.results_processing.estimation_results.EstimationResults method) elapsed (biogeme.profiling.timing.TimedBlock attribute) Elem (class in biogeme.expressions.elem) Elementary (class in biogeme.expressions.elementary_expressions) ElementsTuple (class in biogeme.expressions_registry) Ellipse (class in biogeme.tools.ellipse) embed_expression() (biogeme.expressions.base_expressions.Expression method) EmptyListOfParameters enabled (biogeme.profiling.jax_profile.JaxExecutionProfile attribute) enlarging_factor (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) ensure_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) Equal (class in biogeme.expressions.comparison_expressions) ERROR (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute) (biogeme.latent_variables.validation.ValidationLevel attribute) error_distribution (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) errors (biogeme.audit_tuple.AuditTuple attribute) (biogeme.latent_variables.validation.ValidationResult property) errors_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) errors_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) estimate() (biogeme.biogeme.BIOGEME method), [1] estimate_catalog() (biogeme.biogeme.BIOGEME method), [1] estimate_or_load() (biogeme.biogeme.BIOGEME method), [1] estimate_parameters() (biogeme.mdcev.mdcev.Mdcev method) estimated_parameter_names (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) EstimatedBeta (class in biogeme.bayesian_estimation.bayesian_results) EstimatedBetaSummary (class in biogeme.bayesian_estimation.bayesian_results_summary) EstimateVarianceCovariance (class in biogeme.results_processing.variance_covariance) estimation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) estimation_mode (biogeme.latent_variables.context.BuildContext attribute) (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) estimation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) estimation_results (biogeme.mdcev.mdcev.Mdcev property) EstimationMode (class in biogeme.latent_variables.context)

EstimationResults (class in biogeme.results_processing.estimation_results) EstimationValidationIndices (class in biogeme.validation.prepare_validation) EstimationValidationModels (class in biogeme.validation.split_databases) evaluate() (biogeme.jax_calculator.multiple_formula.MultiRowEvaluator method) (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_expression() (in module biogeme.jax_calculator.single_formula) evaluate_formula() (in module biogeme.jax_calculator.single_formula) evaluate_individual() (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_model_per_row() (in module biogeme.jax_calculator.single_formula) evaluate_simple_expression() (in module biogeme.jax_calculator.simple_formula) evaluate_simple_expression_per_row() (in module biogeme.jax_calculator.simple_formula) exp (class in biogeme.expressions.exp) expected_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) explanatory_variables (biogeme.latent_variables.model_spec.StructuralEquation attribute) expm1 (class in biogeme.expressions.expm1) expression (biogeme.expressions.multiple_expressions.NamedExpression attribute) Expression (class in biogeme.expressions.base_expressions) expression_configuration_iterator() (biogeme.catalog.central_controller.CentralController method) expression_iterator() (biogeme.catalog.central_controller.CentralController method) expression_name (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) expression_text (biogeme.latent_variables.resolved.ResolvedCutpoint attribute) expression_to_value() (in module biogeme.expressions.convert) expression_type (biogeme.expressions.beta_parameters.Beta property) (biogeme.expressions.draws.Draws attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.random_variable.RandomVariable attribute) (biogeme.expressions.variable.Variable attribute) ExpressionCollector (class in biogeme.expressions.collectors) ExpressionRegistry (class in biogeme.expressions_registry) expressions (biogeme.expressions_registry.ElementsTuple attribute) (biogeme.expressions_registry.ExpressionRegistry property) expressions_names_indices() (in module biogeme.expressions_registry) expressions_registry (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) ExpressionVisitor (class in biogeme.expressions.visitor) extract_multiple_expressions_controllers() (in module biogeme.catalog.central_controller) extract_rows() (biogeme.database.container.Database method) extract_slice() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method)

F

FileNotFound files_of_type() (in module biogeme.tools.files) final_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) final_loglikelihood (biogeme.results_processing.estimation_results.EstimationResults property) final_name (biogeme.latent_variables.resolved.ResolvedParameter attribute) (biogeme.latent_variables.resolved.ResolvedParameterRef attribute) find_class() (biogeme.results_processing.recycle_pickle.BiogemeUnpickler method) findiff_g() (in module biogeme.tools.derivatives) findiff_h() (in module biogeme.tools.derivatives) FINITE_DIFFERENCES (biogeme.second_derivatives.SecondDerivativesMode attribute) finite_differences_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) finite_differences_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) first_call_time (biogeme.profiling.benchmark.BenchmarkCaseResult attribute) (biogeme.profiling.jax_profile.FunctionProfile attribute) fix_betas() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) FIXED (biogeme.latent_variables.resolved.CutpointKind attribute) (biogeme.latent_variables.resolved.ParameterStatus attribute) FIXED_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) (biogeme.latent_variables.resolved.ParameterCreationKind attribute) fixed_beta_values (biogeme.expressions.base_expressions.Expression attribute) fixed_betas (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_values (biogeme.expressions_registry.ExpressionRegistry property) fixed_value (biogeme.latent_variables.resolved.ResolvedParameter attribute) Fixing (class in biogeme.latent_variables.normalization_plan) FlatPanelAdapter (class in biogeme.model_elements.database_adapter) flatten_database() (biogeme.database.panel.PanelDatabase method) (in module biogeme.tools.database) forecast() (biogeme.mdcev.mdcev.Mdcev method) forecast_bisection_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_bruteforce_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_comparison_one_draw() (biogeme.mdcev.mdcev.Mdcev method) format_comment() (in module biogeme.parameters) format_elapsed_time() (in module biogeme.tools.time) format_memory_size() (in module biogeme.tools.formatting) format_real_number() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) (in module biogeme.results_processing.latex_output) format_timedelta() (in module biogeme.tools.time) format_with_period() (in module biogeme.results_processing.latex_output) formula (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute)

formula_names (biogeme.model_elements.model_elements.ModelElements property) FREE (biogeme.latent_variables.resolved.CutpointKind attribute) (biogeme.latent_variables.resolved.ParameterStatus attribute) FREE_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) (biogeme.latent_variables.resolved.ParameterCreationKind attribute) free_betas (biogeme.expressions_registry.ExpressionRegistry property) free_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) free_betas_names (biogeme.biogeme.BIOGEME property), [1] (biogeme.expressions_registry.ExpressionRegistry property) (biogeme.model_elements.model_elements.ModelElements property) free_parameters() (biogeme.latent_variables.resolved.ResolvedModel method) from_configuration() (biogeme.biogeme.BIOGEME class method), [1] from_configuration_and_controller() (biogeme.biogeme.BIOGEME class method), [1] from_dict() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary class method) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary class method) (biogeme.catalog.catalog.Catalog class method) (biogeme.catalog.configuration.Configuration class method) from_expression_and_weight() (biogeme.model_elements.model_elements.ModelElements class method) from_netcdf() (biogeme.bayesian_estimation.bayesian_results.BayesianResults class method) from_pickle_file() (biogeme.results_processing.estimation_results.EstimationResults class method) from_string() (biogeme.catalog.configuration.Configuration class method) from_string_id() (biogeme.catalog.specification.Specification class method) from_tuple() (biogeme.draws.native_draws.RandomNumberGeneratorTuple class method) (biogeme.nests.OneNestForCrossNestedLogit class method) (biogeme.nests.OneNestForNestedLogit class method) from_tuple_of_configurations() (biogeme.catalog.configuration.Configuration class method) from_yaml_file() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary class method) (biogeme.results_processing.estimation_results.EstimationResults class method) function (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.tools.derivatives.CheckDerivativesResults attribute) function_evaluator (biogeme.biogeme.BIOGEME property), [1] function_from_compiled_formula() (in module biogeme.jax_calculator.function_call) function_from_expression() (in module biogeme.jax_calculator.function_call) function_output (biogeme.function_output.NamedFunctionOutput attribute) function_parameters (biogeme.biogeme.BIOGEME property), [1] FunctionOutput (class in biogeme.function_output) FunctionProfile (class in biogeme.profiling.jax_profile) functions (biogeme.function_output.DisaggregateFunctionOutput attribute) (biogeme.profiling.jax_profile.JaxExecutionProfile attribute)

G

gamma_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) GammaProfile (class in biogeme.mdcev.gamma_profile) GAUSSIAN (biogeme.latent_variables.model_spec.MeasurementModel attribute) (biogeme.latent_variables.resolved.MeasurementErrorDistribution attribute) Generalized (class in biogeme.mdcev.generalized) generate_document() (biogeme.parameters.Parameters method) generate_draws() (biogeme.draws.factory.DrawFactory method) (biogeme.draws.management.DrawsManagement method) generate_epsilons() (biogeme.mdcev.mdcev.Mdcev method) generate_f12_file() (in module biogeme.results_processing.f12_output) generate_general_information() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) generate_html (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) generate_html_file() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) generate_html_file_from_results() (in module biogeme.bayesian_estimation.html_output) generate_html_report() (in module biogeme.latent_variables.html_report) generate_html_simulated_data() (in module biogeme.bayesian_estimation.html_output) generate_latex_file() (in module biogeme.results_processing.latex_output) generate_latex_file_content() (in module biogeme.results_processing.latex_output) generate_latex_report() (in module biogeme.latent_variables.latex_report) generate_named_output() (biogeme.model_elements.model_elements.ModelElements method) generate_netcdf (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) generate_one_row() (in module biogeme.bayesian_estimation.html_output) generate_operator() (biogeme.assisted.AssistedSpecification method) generate_pickle (biogeme.biogeme.BIOGEME property), [1] generate_python_code() (in module biogeme.latent_variables.python_generator) generate_segment_size() (in module biogeme.sampling_of_alternatives.sampling_of_alternatives) generate_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) generate_unique_ids() (in module biogeme.tools.unique_ids) generate_utility() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) generate_yaml (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) GenerateModel (class in biogeme.sampling_of_alternatives.generate_model) generator (biogeme.draws.factory.DrawSpec attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) generic_alt_specific_catalogs() (in module biogeme.catalog.generic_alt_specific_catalog) generic_name (biogeme.catalog.specification.Specification attribute) get() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) get_all_controllers() (biogeme.catalog.catalog.Catalog method) get_alpha_dict() (biogeme.nests.NestsForCrossNestedLogit method) get_alpha_values() (biogeme.nests.NestsForCrossNestedLogit method) get_antithetic() (in module biogeme.draws.generators) get_attributes_from_expression() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) get_beta() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_beta_ref_name() (biogeme.segmentation.segmentation.Segmentation method) get_beta_values() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) get_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_betas_for_sensitivity_analysis() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) get_children() (biogeme.expressions.base_expressions.Expression method) get_class_name() (biogeme.expressions.base_expressions.Expression method) get_column() (biogeme.database.container.Database method) get_complete_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_confidence_ellipse() (biogeme.results_processing.estimation_results.EstimationResults method) get_configuration() (biogeme.catalog.central_controller.CentralController method) get_copy() (biogeme.database.container.Database method) get_cross_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_default_value() (in module biogeme.parameters) get_default_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_diagnostic_figure_references() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_dict_expressions() (in module biogeme.expressions.convert) get_dict_values() (in module biogeme.expressions.convert) get_distribution() (in module biogeme.draws.pymc_draws) get_element() (biogeme.catalog.specification.Specification method) get_elementary_expression() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_estimated_parameters() (biogeme.results_processing.estimation_results.EstimationResults method) get_expression() (in module biogeme.dict_of_formulas) get_f12() (in module biogeme.results_processing.f12_output) get_file_logger() (in module biogeme.biogeme_logging) get_file_size() (in module biogeme.tools.files) get_fixing() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) get_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) get_generator() (biogeme.draws.factory.DrawFactory method) get_halton_draws() (in module biogeme.draws.generators) get_html() (biogeme.catalog.configuration.Configuration method) (in module biogeme.version) get_html_arviz_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_arviz_reproduction_instructions() (in module biogeme.bayesian_estimation.html_output) get_html_condition_number() (in module biogeme.results_processing.html_output) get_html_correlation_results() (in module biogeme.results_processing.html_output) get_html_estimated_parameters() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_footer() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_general_statistics() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_header() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_identification_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_one_pair_of_parameters() (in module biogeme.results_processing.html_output) get_html_one_parameter() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_preamble() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_identification_diagnostics_summary() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_index() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_iterator() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method)

get_latex() (in module biogeme.version) get_latex_estimated_parameters() (in module biogeme.results_processing.latex_output) get_latex_general_statistics() (in module biogeme.results_processing.latex_output) get_latex_one_parameter() (in module biogeme.results_processing.latex_output) get_latex_preamble() (in module biogeme.results_processing.latex_output) get_latin_hypercube_draws() (in module biogeme.draws.generators) get_list_of_available_distributions() (in module biogeme.draws.pymc_draws) get_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_lsh_weights() (in module biogeme.lsh) get_mev_for_cross_nested() (in module biogeme.models.cnl) get_mev_for_cross_nested_mu() (in module biogeme.models.cnl) get_mev_for_nested() (in module biogeme.models.nested) get_mev_for_nested_mu() (in module biogeme.models.nested) get_mev_generating_for_nested() (in module biogeme.models.nested) get_named_betas_values() (biogeme.expressions_registry.ExpressionRegistry method) get_nest() (in module biogeme.nests) get_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_new_file_name() (in module biogeme.filenames) get_normal_wichura_draws() (in module biogeme.draws.generators) get_operator_decreased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_increased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_two_controllers() (biogeme.catalog.central_controller.CentralController method) get_pandas_correlation_results() (in module biogeme.results_processing.pandas_output) get_pandas_estimated_parameters() (in module biogeme.bayesian_estimation.pandas_output) (in module biogeme.results_processing.pandas_output) get_pandas_one_pair_of_parameters() (in module biogeme.results_processing.pandas_output) get_pandas_one_parameter() (in module biogeme.results_processing.pandas_output) get_pandas_other_variables() (in module biogeme.bayesian_estimation.pandas_output) get_param_tuple() (biogeme.parameters.Parameters method) get_parameter_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_prime_numbers() (in module biogeme.tools.primes) get_reference_beta() (biogeme.segmentation.segmentation.Segmentation method) get_results() (biogeme.catalog.specification.Specification method) get_screen_logger() (in module biogeme.biogeme_logging) get_selection() (biogeme.catalog.configuration.Configuration method) get_sign_for_p_value() (in module biogeme.results_processing.latex_output) get_string_id() (biogeme.catalog.configuration.Configuration method) get_sub_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_text() (in module biogeme.version) get_uniform() (in module biogeme.draws.generators) get_user_notes() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_value() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.parameters.Parameters method) get_value_and_derivatives() (in module biogeme.jax_calculator.single_formula) get_value_c() (in module biogeme.jax_calculator.single_formula) get_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_version() (in module biogeme.version) getHtml() (in module biogeme.version) getLaTeX() (in module biogeme.version) getMevForCrossNested() (in module biogeme.models.cnl) getMevForCrossNestedMu() (in module biogeme.models.cnl) getMevForNested() (in module biogeme.models.nested) getMevForNestedMu() (in module biogeme.models.nested) getMevGeneratingForNested() (in module biogeme.models.nested) getText() (in module biogeme.version) getValue() (biogeme.expressions.logit_expressions.LogLogit method) getVersion() (in module biogeme.version) gradient (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) gradient_norm (biogeme.results_processing.estimation_results.EstimationResults property) gradients (biogeme.function_output.DisaggregateFunctionOutput attribute) Greater (class in biogeme.expressions.comparison_expressions) GreaterOrEqual (class in biogeme.expressions.comparison_expressions) group_of_parameters (biogeme.biogeme.BIOGEME attribute), [1]

H

halton2() (in module biogeme.draws.native_draws) halton3() (in module biogeme.draws.native_draws) halton5() (in module biogeme.draws.native_draws) has_gaussian (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) has_ordered_logit (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) has_ordered_probit (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) has_ordinal (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) has_posterior_draws (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) hdi_high (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute)

hdi_low (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) hdi_prob (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) hessian (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) hessians (biogeme.function_output.DisaggregateFunctionOutput attribute)

I

id_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) idata (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) identification_chosen_alternatives() (biogeme.mdcev.mdcev.Mdcev method) identification_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) identification_diagnostics_summary (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) identification_threshold (biogeme.biogeme.BIOGEME property) IGNORE_SAME (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute) import_document() (biogeme.parameters.Parameters method) include_cnl_alphas() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) increased_controller() (biogeme.catalog.central_controller.CentralController method) index (biogeme.latent_variables.normalization_refs.ThresholdDelta attribute) index_of() (in module biogeme.expressions.logit_expressions) indicator_name (biogeme.latent_variables.model_spec.IndicatorMeasurementSpec attribute) (biogeme.latent_variables.normalization_refs.MeasurementIntercept attribute) (biogeme.latent_variables.normalization_refs.MeasurementLoading attribute) (biogeme.latent_variables.normalization_refs.MeasurementSigma attribute) (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) indicator_names (biogeme.latent_variables.resolved.ResolvedLatentVariable attribute) IndicatorMeasurementSpec (class in biogeme.latent_variables.model_spec) indicators (biogeme.latent_variables.model_spec.LatentVariable attribute) indices (biogeme.expressions_registry.ElementsTuple attribute) individual_draws() (in module biogeme.expressions.individual_draws) individual_draws_handler() (in module biogeme.expressions.individual_draws) INDIVIDUALS (biogeme.expressions.bayesian.Dimension attribute) individuals (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) indptr (biogeme.database.panel_map.ContiguousPanelMap attribute) infeasible_cg (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) info_gamma_parameters() (biogeme.mdcev.mdcev.Mdcev method) init (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) init_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1]

initial_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) initial_radius (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) initial_value (biogeme.latent_variables.resolved.ResolvedParameter attribute) insert_valid_keyword() (in module biogeme.dict_of_formulas) Integrate() (in module biogeme.expressions.deprecated) integrated_likelihood (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) IntegrateNormal (class in biogeme.expressions.integrate) intercept (biogeme.latent_variables.model_spec.StructuralEquation attribute) (biogeme.latent_variables.resolved.ResolvedLinearCombination attribute) intersection() (biogeme.nests.OneNestForNestedLogit method) is_any_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_boolean() (in module biogeme.check_parameters) is_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_complex() (biogeme.expressions.base_expressions.Expression method) is_empty() (biogeme.database.container.Database method) is_fixed (biogeme.expressions.beta_parameters.Beta property) is_fixed() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) is_free (biogeme.expressions.beta_parameters.Beta property) is_hessian_available (biogeme.results_processing.estimation_results.EstimationResults property) is_integer() (in module biogeme.check_parameters) is_model_complex() (biogeme.biogeme.BIOGEME method), [1] is_next_alternative_chosen() (biogeme.mdcev.mdcev.Mdcev method) is_non_negative() (in module biogeme.check_parameters) is_number() (in module biogeme.check_parameters) is_numeric() (in module biogeme.expressions.numeric_tools) is_panel() (biogeme.database.container.Database method) is_positive() (in module biogeme.check_parameters) is_similar_to() (in module biogeme.dict_of_formulas) is_valid() (biogeme.assisted.AssistedSpecification method) is_valid_filename() (in module biogeme.tools.files) issue_deprecation_warning() (in module biogeme.deprecated) item_index (biogeme.expressions.multiple_expressions.CatalogItem attribute) item_name (biogeme.expressions.multiple_expressions.CatalogItem attribute)

J

JaxExecutionProfile (class in biogeme.profiling.jax_profile)

K

key() (biogeme.latent_variables.normalization_refs.MeasurementIntercept method) (biogeme.latent_variables.normalization_refs.MeasurementLoading method) (biogeme.latent_variables.normalization_refs.MeasurementSigma method) (biogeme.latent_variables.normalization_refs.ParameterRef method) (biogeme.latent_variables.normalization_refs.StructuralCoefficient method) (biogeme.latent_variables.normalization_refs.StructuralIntercept method) (biogeme.latent_variables.normalization_refs.StructuralSigma method) (biogeme.latent_variables.normalization_refs.ThresholdDelta method) (biogeme.latent_variables.normalization_refs.ThresholdFirst method)

kind (biogeme.latent_variables.resolved.ResolvedCutpoint attribute)

L

label (biogeme.profiling.benchmark.BenchmarkCaseResult attribute) (biogeme.profiling.benchmark.BenchmarkSeriesResult attribute) (biogeme.profiling.timing.TimedBlock attribute) large_data_set (biogeme.biogeme.BIOGEME property) largest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) largest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) largest_neighborhood (biogeme.biogeme.BIOGEME property) last_call_time (biogeme.profiling.jax_profile.FunctionProfile attribute) latent_expressions (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) latent_name (biogeme.latent_variables.normalization_refs.MeasurementLoading attribute) (biogeme.latent_variables.normalization_refs.StructuralCoefficient attribute) (biogeme.latent_variables.normalization_refs.StructuralIntercept attribute) (biogeme.latent_variables.normalization_refs.StructuralSigma attribute) (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) latent_variables (biogeme.latent_variables.resolved.ResolvedModel attribute) LatentVariable (class in biogeme.latent_variables.model_spec) Less (class in biogeme.expressions.comparison_expressions) LessOrEqual (class in biogeme.expressions.comparison_expressions) level (biogeme.latent_variables.validation.Diagnostic attribute) likelihood_ratio_init (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_null (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_test() (biogeme.results_processing.estimation_results.EstimationResults method) (in module biogeme.tools.likelihood_ratio) likelihoodregression() (in module biogeme.loglikelihood) LikertIndicator (class in biogeme.latent_variables.model_spec) LikertType (class in biogeme.latent_variables.model_spec) LinearTermTuple (class in biogeme.expressions.linear_utility) LinearUtility (class in biogeme.expressions.linear_utility) list_array_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) list_of_all_betas_in_expression() (in module biogeme.expressions.collectors) list_of_alternatives (biogeme.nests.OneNestForNestedLogit attribute) list_of_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_draws_in_expression() (in module biogeme.expressions.collectors) list_of_expressions() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_fixed_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) list_of_random_variables_in_expression() (in module biogeme.expressions.collectors) list_of_terms (biogeme.expressions.linear_utility.LinearUtility attribute) list_of_variables_in_expression() (in module biogeme.expressions.collectors) load() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults class method) log (class in biogeme.expressions.log) LOG_EXP (biogeme.latent_variables.context.PositivityMode attribute) (biogeme.latent_variables.resolved.PositivityStrategy attribute) LOG_EXP_BETA (biogeme.latent_variables.resolved.ParameterCreationKind attribute) log_like (biogeme.biogeme.BIOGEME property), [1] log_like_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property)

log_ordered_logit() (in module biogeme.models.ordered) log_ordered_logit_from_thresholds() (in module biogeme.models.ordered) log_ordered_probit() (in module biogeme.models.ordered) log_ordered_probit_from_thresholds() (in module biogeme.models.ordered) log_statistics() (biogeme.assisted.ParetoPostProcessing method) logcnl() (in module biogeme.models.cnl) logcnl_avail() (in module biogeme.models.cnl) logcnlmu() (in module biogeme.models.cnl) logger (in module biogeme.database.container) (in module biogeme.segmentation.database) LOGISTIC (biogeme.latent_variables.resolved.MeasurementErrorDistribution attribute) logisticcdf() (in module biogeme.distributions) logit() (in module biogeme.models.logit) logit_choice_avail() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.multiple_expressions.MultipleExpression method) LogitTuple (class in biogeme.expressions.base_expressions) loglike (biogeme.biogeme.BIOGEME property), [1] loglikelihood (biogeme.model_elements.model_elements.ModelElements property) loglikelihood() (biogeme.mdcev.mdcev.Mdcev method) (in module biogeme.loglikelihood) loglikelihood_dimension() (in module biogeme.multiobjectives) loglikelihood_name (biogeme.model_elements.model_elements.ModelElements attribute) loglikelihoodregression() (in module biogeme.loglikelihood) LogLogit (class in biogeme.expressions.logit_expressions) loglogit() (in module biogeme.models.logit) logmev() (in module biogeme.models.mev) logmev_endogenous_sampling() (in module biogeme.models.mev) logmev_endogenousSampling() (in module biogeme.models.mev) lognested() (in module biogeme.models.nested) lognested_mev_mu() (in module biogeme.models.nested) lognestedMevMu() (in module biogeme.models.nested) lognormalpdf() (in module biogeme.distributions) logzero (class in biogeme.expressions.logzero) loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) loo_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) loo_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) LOWER_BOUND (biogeme.latent_variables.context.PositivityMode attribute) lower_bound (biogeme.latent_variables.model_spec.PositiveParameterSpec attribute) LOWER_BOUND (biogeme.latent_variables.resolved.PositivityStrategy attribute) lower_bound (biogeme.latent_variables.resolved.ResolvedParameter attribute) lower_bound_dual_variable() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) lower_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) LRTuple (class in biogeme.tools.likelihood_ratio)

M

make_draw_specs() (biogeme.draws.factory.DrawFactory method) make_sampling_config() (in module biogeme.bayesian_estimation.sampling_strategy) mapping (biogeme.function_output.NamedFunctionOutput attribute) max_iterations (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) max_number_parameters_to_report (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) max_treedepth (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) maximum_attempts (biogeme.biogeme.BIOGEME property) MAXIMUM_LIKELIHOOD (biogeme.latent_variables.context.EstimationMode attribute) maximum_number_catalog_expressions (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) maximum_number_parameters (biogeme.biogeme.BIOGEME property) (biogeme.catalog.specification.Specification attribute) mcmc_sampling_strategy (biogeme.biogeme.BIOGEME property) Mdcev (class in biogeme.mdcev.mdcev) mdcev_count() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) mdcev_row_split() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) MdcevConfiguration (class in biogeme.mdcev.mdcev) mean (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MEAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) mean (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) mean_repeated_time (biogeme.profiling.benchmark.BenchmarkCaseResult property) mean_time (biogeme.profiling.jax_profile.FunctionProfile property) measurement_equations (biogeme.latent_variables.resolved.ResolvedModel attribute) MEASUREMENT_INTERCEPT (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_intercept_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) MEASUREMENT_LOADING (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_loading_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) measurement_model (biogeme.latent_variables.model_spec.IndicatorMeasurementSpec attribute) (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) measurement_models_present (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) measurement_prefix() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) measurement_sigma (biogeme.latent_variables.model_spec.IndicatorMeasurementSpec attribute) MEASUREMENT_SIGMA (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_sigma_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) measurement_terms (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) MeasurementConfiguration (class in biogeme.latent_variables.model_spec) MeasurementErrorDistribution (class in biogeme.latent_variables.resolved) MeasurementIntercept (class in biogeme.latent_variables.normalization_refs) MeasurementLoading (class in biogeme.latent_variables.normalization_refs) MeasurementModel (class in biogeme.latent_variables.model_spec) MeasurementSigma (class in biogeme.latent_variables.normalization_refs) median (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MEDIAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) median (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) merge_audit_tuples() (in module biogeme.audit_tuple) message (biogeme.latent_variables.validation.Diagnostic attribute) (biogeme.tools.likelihood_ratio.LRTuple attribute) metadata (biogeme.latent_variables.resolved.ResolvedModel attribute) (biogeme.profiling.benchmark.BenchmarkSeriesResult attribute) mev() (in module biogeme.models.mev) mev_endogenous_sampling() (in module biogeme.models.mev) mev_endogenousSampling() (in module biogeme.models.mev) mev_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_prefix (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) mev_sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) Minus (class in biogeme.expressions.minus) missing_data (biogeme.biogeme.BIOGEME property) mixedloglikelihood() (in module biogeme.loglikelihood) MLHS_anti() (in module biogeme.draws.native_draws) mode (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MODE (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) mode (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) model_elements (biogeme.biogeme.BIOGEME property), [1] model_estimation() (in module biogeme.likelihood.model_estimation) model_name (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) model_names (biogeme.catalog.specification.Specification attribute) ModelElements (class in biogeme.model_elements.model_elements) ModelElementsAdapter (class in biogeme.model_elements.database_adapter) modelName (biogeme.biogeme.BIOGEME property), [1] ModelNames (class in biogeme.tools.unique_ids) modify_controller() (biogeme.catalog.controller.Controller method) modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) module biogeme.assisted biogeme.audit_tuple biogeme.bayesian_estimation.bayesian_results biogeme.bayesian_estimation.bayesian_results_summary biogeme.bayesian_estimation.check_shape biogeme.bayesian_estimation.html_output biogeme.bayesian_estimation.pandas_output biogeme.bayesian_estimation.raw_bayesian_results biogeme.bayesian_estimation.sampling biogeme.bayesian_estimation.sampling_strategy biogeme.biogeme, [1] biogeme.biogeme_logging biogeme.catalog.catalog biogeme.catalog.catalog_iterator biogeme.catalog.central_controller biogeme.catalog.configuration biogeme.catalog.controller biogeme.catalog.generic_alt_specific_catalog biogeme.catalog.segmentation_catalog biogeme.catalog.specification biogeme.check_parameters biogeme.cnl biogeme.constants biogeme.data.mdcev_data biogeme.data.optima biogeme.data.swissmetro biogeme.database.audit biogeme.database.container biogeme.database.mdcev biogeme.database.panel biogeme.database.panel_map biogeme.database.sampling biogeme.default_parameters biogeme.deprecated biogeme.dict_of_formulas biogeme.distributions biogeme.draws.factory biogeme.draws.generators biogeme.draws.management biogeme.draws.native_draws biogeme.draws.pymc_draws biogeme.exceptions biogeme.expressions.add_prefix_suffix biogeme.expressions.audit biogeme.expressions.base_expressions biogeme.expressions.bayesian biogeme.expressions.belongs_to biogeme.expressions.beta_parameters biogeme.expressions.binary_expressions biogeme.expressions.binary_max biogeme.expressions.binary_min biogeme.expressions.boxcox biogeme.expressions.collectors biogeme.expressions.comparison_expressions biogeme.expressions.conditional_sum biogeme.expressions.convert biogeme.expressions.cos biogeme.expressions.deprecated biogeme.expressions.derive biogeme.expressions.distributed_parameter biogeme.expressions.divide biogeme.expressions.draws biogeme.expressions.elem biogeme.expressions.elementary_expressions biogeme.expressions.elementary_types biogeme.expressions.exp biogeme.expressions.expm1 biogeme.expressions.individual_draws biogeme.expressions.integrate biogeme.expressions.jax_utils biogeme.expressions.linear_utility biogeme.expressions.log biogeme.expressions.logical_and biogeme.expressions.logical_or biogeme.expressions.logit_expressions biogeme.expressions.logzero biogeme.expressions.minus biogeme.expressions.montecarlo biogeme.expressions.multiple_expressions biogeme.expressions.multiple_product biogeme.expressions.multiple_sum biogeme.expressions.named_expression biogeme.expressions.normalcdf biogeme.expressions.numeric_expressions biogeme.expressions.numeric_tools biogeme.expressions.ordered biogeme.expressions.panel_likelihood_trajectory biogeme.expressions.panel_log_likelihood biogeme.expressions.plus biogeme.expressions.power biogeme.expressions.power_constant biogeme.expressions.prepare_for_panel biogeme.expressions.random_variable biogeme.expressions.rename_variables biogeme.expressions.set_panel_id biogeme.expressions.sin biogeme.expressions.times biogeme.expressions.unary_expressions biogeme.expressions.unary_minus biogeme.expressions.validation biogeme.expressions.variable biogeme.expressions.visitor biogeme.expressions_registry biogeme.filenames biogeme.floating_point biogeme.function_output biogeme.jax_calculator.function_call biogeme.jax_calculator.multiple_formula biogeme.jax_calculator.simple_formula biogeme.jax_calculator.single_formula biogeme.latent_variables.biogeme_builder biogeme.latent_variables.context biogeme.latent_variables.html_report biogeme.latent_variables.io biogeme.latent_variables.latex_report biogeme.latent_variables.model_spec biogeme.latent_variables.naming biogeme.latent_variables.normalization_plan biogeme.latent_variables.normalization_refs biogeme.latent_variables.python_generator biogeme.latent_variables.resolved biogeme.latent_variables.resolver biogeme.latent_variables.tex_utils biogeme.latent_variables.validation biogeme.likelihood.bootstrap biogeme.likelihood.linear_regression biogeme.likelihood.model_estimation biogeme.likelihood.negative_likelihood biogeme.loglikelihood biogeme.lsh biogeme.mdcev.database_utils biogeme.mdcev.gamma_profile biogeme.mdcev.generalized biogeme.mdcev.mdcev biogeme.mdcev.non_monotonic biogeme.mdcev.translated biogeme.model_elements.audit biogeme.model_elements.database_adapter biogeme.model_elements.model_elements biogeme.models.boxcox biogeme.models.cnl biogeme.models.logit biogeme.models.mev biogeme.models.nested biogeme.models.ordered biogeme.models.piecewise biogeme.multiobjectives biogeme.nests biogeme.optimization biogeme.parameters biogeme.partition biogeme.profiling.benchmark biogeme.profiling.environment biogeme.profiling.jax_profile biogeme.profiling.timing biogeme.pymc_calculator biogeme.results biogeme.results_processing.compilation biogeme.results_processing.estimation_results biogeme.results_processing.f12_output biogeme.results_processing.html_output biogeme.results_processing.latex_output biogeme.results_processing.pandas_output biogeme.results_processing.pareto biogeme.results_processing.raw_estimation_results biogeme.results_processing.recycle_pickle biogeme.results_processing.variance_covariance biogeme.sampling_of_alternatives.choice_set_generation biogeme.sampling_of_alternatives.generate_model biogeme.sampling_of_alternatives.sampling_context biogeme.sampling_of_alternatives.sampling_of_alternatives biogeme.second_derivatives biogeme.segmentation.database biogeme.segmentation.one_segmentation biogeme.segmentation.segmentation biogeme.segmentation.segmentation_context biogeme.segmentation.segmented_beta biogeme.tools.checks biogeme.tools.database biogeme.tools.derivatives biogeme.tools.ellipse biogeme.tools.files biogeme.tools.formatting biogeme.tools.jax_multicore biogeme.tools.likelihood_ratio biogeme.tools.pandas_to_latex biogeme.tools.primes biogeme.tools.pymc_utils biogeme.tools.serialize_numpy biogeme.tools.simulate biogeme.tools.time biogeme.tools.timeit_context_manager biogeme.tools.timeit_decorator biogeme.tools.unique_ids biogeme.tools.yaml biogeme.validation.cross_validation biogeme.validation.prepare_validation biogeme.validation.split_databases biogeme.validity biogeme.version

MONOTONE (biogeme.latent_variables.resolved.ThresholdConstructionKind attribute) monte_carlo (biogeme.results_processing.estimation_results.EstimationResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) MonteCarlo (class in biogeme.expressions.montecarlo) MultipleExpression (class in biogeme.expressions.multiple_expressions) MultipleProduct (class in biogeme.expressions.multiple_product) MultipleSum (class in biogeme.expressions.multiple_sum) MultiRowEvaluator (class in biogeme.jax_calculator.multiple_formula)

N

n_indicators (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) n_latent_variables (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) n_threshold_systems (biogeme.latent_variables.resolved.ResolvedModelMetadata attribute) name (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.factory.DrawSpec attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.multiple_expressions.NamedExpression attribute) (biogeme.latent_variables.model_spec.LatentVariable attribute) (biogeme.latent_variables.model_spec.LikertIndicator attribute) (biogeme.latent_variables.model_spec.StructuralEquation attribute) (biogeme.latent_variables.resolved.ResolvedLatentVariable attribute) (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) (biogeme.parameters.NameSectionTuple attribute) (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute) named_function_output() (in module biogeme.expressions.named_expression) NamedCallableExpression (class in biogeme.jax_calculator.function_call) NamedExpression (class in biogeme.expressions.multiple_expressions) NamedFunctionOutput (class in biogeme.function_output) NamedFunctionResult (class in biogeme.function_output) NamedOutputMixin (class in biogeme.function_output) names (biogeme.expressions_registry.ElementsTuple attribute) NameSectionTuple (class in biogeme.parameters) naming (biogeme.latent_variables.context.BuildContext attribute) NamingPolicy (class in biogeme.latent_variables.naming) NegativeLikelihood (class in biogeme.likelihood.negative_likelihood) nest_param (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) nested() (in module biogeme.models.nested) nested_mev_mu() (in module biogeme.models.nested) nestedMevMu() (in module biogeme.models.nested) Nests (class in biogeme.nests) NestsForCrossNestedLogit (class in biogeme.nests) NestsForNestedLogit (class in biogeme.nests) neutral_labels (biogeme.latent_variables.model_spec.LikertType attribute) (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) NEVER (biogeme.second_derivatives.SecondDerivativesMode attribute) new_name (biogeme.expressions.rename_variables.OldNewName attribute) newton_linesearch_for_biogeme() (in module biogeme.optimization) newton_trust_region_for_biogeme() (in module biogeme.optimization) NONE (biogeme.latent_variables.resolved.PositivityStrategy attribute) NonMonotonic (class in biogeme.mdcev.non_monotonic) normal_antithetic() (in module biogeme.draws.native_draws) normal_halton2() (in module biogeme.draws.native_draws) normal_halton3() (in module biogeme.draws.native_draws)

normal_halton5() (in module biogeme.draws.native_draws) normal_logpdf() (in module biogeme.distributions) normal_MLHS() (in module biogeme.draws.native_draws) normal_MLHS_anti() (in module biogeme.draws.native_draws) NormalCdf (class in biogeme.expressions.normalcdf) normalization (biogeme.latent_variables.resolved.ResolvedModel attribute) normalization_notes (biogeme.latent_variables.resolved.ResolvedLatentVariable attribute) (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) NormalizationPlan (class in biogeme.latent_variables.normalization_plan) normalpdf() (in module biogeme.distributions) note (biogeme.latent_variables.normalization_plan.Fixing attribute) NotEqual (class in biogeme.expressions.comparison_expressions) notes (biogeme.latent_variables.resolved.ResolvedParameter attribute) (biogeme.profiling.jax_profile.JaxExecutionProfile attribute) NotImplementedError null_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) null_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1] num_columns() (biogeme.database.container.Database method) num_rows() (biogeme.database.container.Database method) num_runs (biogeme.tools.time.Timing property) number_of_alternatives (biogeme.mdcev.mdcev.Mdcev property) number_of_configurations() (biogeme.catalog.central_controller.CentralController method) number_of_draws (biogeme.biogeme.BIOGEME property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_excluded_data (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_free_betas (biogeme.expressions_registry.ExpressionRegistry property) number_of_free_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_jobs (biogeme.biogeme.BIOGEME property) number_of_neighbors (biogeme.biogeme.BIOGEME property) number_of_observations (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_random_variables (biogeme.expressions_registry.ExpressionRegistry property) number_of_segments() (biogeme.partition.Partition method) number_of_threads (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) number_unknown_parameters() (biogeme.biogeme.BIOGEME method), [1] Numeric (class in biogeme.expressions.numeric_expressions) NUMERIC_CONSTANT (biogeme.latent_variables.resolved.ParameterCreationKind attribute) numerically_safe (biogeme.biogeme.BIOGEME property) nuts_kwargs (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute)

O

OBS (biogeme.expressions.bayesian.Dimension attribute) observation_suffix() (in module biogeme.database.panel) observed_variable_name (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) old_name (biogeme.expressions.rename_variables.OldNewName attribute) OldNewName (class in biogeme.expressions.rename_variables) on_database_update() (biogeme.model_elements.model_elements.ModelElements method) OneNestForCrossNestedLogit (class in biogeme.nests) OneNestForNestedLogit (class in biogeme.nests) OneSegmentation (class in biogeme.segmentation.one_segmentation) only_robust_stats (biogeme.biogeme.BIOGEME property) optimal_consumption() (biogeme.mdcev.mdcev.Mdcev method) optimal_consumption_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) optimization() (in module biogeme.likelihood.model_estimation) optimization_algorithm (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) optimization_messages (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

optimization_parameters (biogeme.biogeme.BIOGEME property), [1] Or (class in biogeme.expressions.logical_or) ORDERED_LOGIT (biogeme.latent_variables.model_spec.MeasurementModel attribute) ordered_logit() (in module biogeme.models.ordered) ordered_logit_from_thresholds() (in module biogeme.models.ordered) ORDERED_PROBIT (biogeme.latent_variables.model_spec.MeasurementModel attribute) ordered_probit() (in module biogeme.models.ordered) ordered_probit_from_thresholds() (in module biogeme.models.ordered) OrderedBase (class in biogeme.expressions.ordered) OrderedLogit (class in biogeme.expressions.ordered) OrderedLogLogit (class in biogeme.expressions.ordered) OrderedLogProbit (class in biogeme.expressions.ordered) OrderedProbit (class in biogeme.expressions.ordered) ordinal_enforce_order (biogeme.latent_variables.context.BuildContext attribute) ordinal_eps (biogeme.latent_variables.context.BuildContext attribute) other_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) outside_good_index (biogeme.mdcev.mdcev.Mdcev property) OVERWRITE (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute)

P

p_loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) p_value (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) p_waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) panel() (biogeme.database.container.Database method) panel_column (biogeme.database.container.Database attribute) (biogeme.expressions.prepare_for_panel.PanelColumnSetting attribute) panel_column_handler() (in module biogeme.expressions.prepare_for_panel) panel_id_handler() (in module biogeme.expressions.set_panel_id) PanelColumnSetting (class in biogeme.expressions.prepare_for_panel) PanelDatabase (class in biogeme.database.panel) PanelLikelihoodTrajectory (class in biogeme.expressions.panel_likelihood_trajectory) PanelLogLikelihood (class in biogeme.expressions.panel_log_likelihood) parameter_estimates() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) parameter_exists() (biogeme.parameters.Parameters method) parameter_groups (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) parameter_names (biogeme.parameters.Parameters property) ParameterCreationKind (class in biogeme.latent_variables.resolved) ParameterRef (class in biogeme.latent_variables.normalization_refs) ParameterRole (class in biogeme.latent_variables.resolved) parameters (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) (biogeme.latent_variables.resolved.ResolvedModel attribute) Parameters (class in biogeme.parameters) parameters_in_section() (biogeme.parameters.Parameters method) ParameterStatus (class in biogeme.latent_variables.resolved) ParameterTuple (class in biogeme.default_parameters) pareto_optimal() (in module biogeme.results_processing.pareto) ParetoPostProcessing (class in biogeme.assisted) parse_boolean() (in module biogeme.parameters) Partition (class in biogeme.partition)

pickle_to_yaml() (in module biogeme.results_processing.recycle_pickle) piecewise_as_variable() (in module biogeme.models.piecewise) piecewise_formula() (in module biogeme.models.piecewise) piecewise_function() (in module biogeme.models.piecewise) piecewise_variables() (in module biogeme.models.piecewise) plot() (biogeme.assisted.ParetoPostProcessing method) Plus (class in biogeme.expressions.plus) PositiveParameterSpec (class in biogeme.latent_variables.model_spec) positivity_mode (biogeme.latent_variables.context.BuildContext attribute) positivity_strategy (biogeme.latent_variables.resolved.ResolvedParameter attribute) PositivityMode (class in biogeme.latent_variables.context) PositivityStrategy (class in biogeme.latent_variables.resolved) posterior_draws (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary property) posterior_mean_by_observation() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) posterior_predictive_loglike (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) PosteriorSummary (class in biogeme.bayesian_estimation.bayesian_results) Power (class in biogeme.expressions.power) PowerConstant (class in biogeme.expressions.power_constant) prefix_suffix_variable_name_handler() (in module biogeme.expressions.add_prefix_suffix) prepare() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) prepare_for_panel() (in module biogeme.expressions.prepare_for_panel) prepare_operators() (biogeme.catalog.central_controller.CentralController method) pretty_model() (in module biogeme.tools.pymc_utils) price_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) print_file_size() (in module biogeme.tools.files) print_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) print_list_of_parameters() (in module biogeme.default_parameters) PriorFactory (class in biogeme.expressions.beta_parameters) process_row() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) pymc_formula_evaluator() (in module biogeme.pymc_calculator) PymcModelBuilderType (class in biogeme.expressions.bayesian)

Q

quick_estimate() (biogeme.biogeme.BIOGEME method), [1]

R

raise_for_errors() (biogeme.latent_variables.validation.ValidationResult method) RANDOM_VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) random_variables (biogeme.expressions_registry.ExpressionRegistry property) random_variables_indices (biogeme.expressions_registry.ExpressionRegistry property) RandomNumberGeneratorTuple (class in biogeme.draws.native_draws) RandomVariable (class in biogeme.expressions.random_variable) RAO_CRAMER (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) rao_cramer_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) RawBayesianResults (class in biogeme.bayesian_estimation.raw_bayesian_results) RawEstimationResults (class in biogeme.results_processing.raw_estimation_results) RawResults (class in biogeme.results_processing.recycle_pickle) read_data() (in module biogeme.data.mdcev_data) (in module biogeme.data.optima) (in module biogeme.data.swissmetro) read_file() (biogeme.parameters.Parameters method) read_pickle_biogeme() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_10() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_11() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_12() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_13() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_14() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_7() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_8() (in module biogeme.results_processing.recycle_pickle) reason (biogeme.latent_variables.resolved.ResolvedNormalizationRule attribute) (biogeme.validity.Validity attribute) record_build() (biogeme.profiling.jax_profile.JaxExecutionProfile method) recursive_construct_jax_function() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) recursive_construct_jax_function_beta() (biogeme.expressions.derive.Derive method) recursive_construct_jax_function_variable() (biogeme.expressions.derive.Derive method) recursive_construct_pymc_model_builder() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method)

recursive_construct_pymc_model_builder_old() (biogeme.expressions.logit_expressions.LogLogit method) reestimate() (biogeme.assisted.ParetoPostProcessing method) reference_indicator (biogeme.latent_variables.resolved.ResolvedLatentVariable attribute) register() (biogeme.expressions.collectors.ExpressionCollector method) (biogeme.expressions.visitor.ExpressionVisitor method) register_listener() (biogeme.database.container.Database method) regression_likelihood() (in module biogeme.likelihood.linear_regression) regression_loglikelihood() (in module biogeme.likelihood.linear_regression) RegularAdapter (class in biogeme.model_elements.database_adapter) remove() (biogeme.database.container.Database method) (biogeme.tools.files.TemporaryFile method) remove_column() (biogeme.database.container.Database method) remove_rows() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method) rename_all_variables() (in module biogeme.expressions.rename_variables) rename_and_renumber() (in module biogeme.results_processing.latex_output) rename_elementary() (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) rename_variable_handler() (in module biogeme.expressions.rename_variables) repeated_call_times (biogeme.profiling.benchmark.BenchmarkCaseResult attribute) report_array() (biogeme.biogeme.BIOGEME method), [1] report_jax_cpu_devices() (in module biogeme.tools.jax_multicore) report_jax_environment() (in module biogeme.profiling.environment) report_stored_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) reporting() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) requires_draws (biogeme.expressions_registry.ExpressionRegistry property) requires_draws() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) reset_indices() (biogeme.database.container.Database method) reset_selection() (biogeme.catalog.central_controller.CentralController method) (biogeme.catalog.controller.Controller method) resolve_model() (in module biogeme.latent_variables.resolver) ResolvedConstant (class in biogeme.latent_variables.resolved) ResolvedCutpoint (class in biogeme.latent_variables.resolved) ResolvedLatentVariable (class in biogeme.latent_variables.resolved) ResolvedLinearCombination (class in biogeme.latent_variables.resolved) ResolvedLinearTerm (class in biogeme.latent_variables.resolved) ResolvedMeasurementEquation (class in biogeme.latent_variables.resolved) ResolvedModel (class in biogeme.latent_variables.resolved) ResolvedModelMetadata (class in biogeme.latent_variables.resolved) ResolvedNormalizationRule (class in biogeme.latent_variables.resolved) ResolvedNormalizationSummary (class in biogeme.latent_variables.resolved) ResolvedParameter (class in biogeme.latent_variables.resolved) ResolvedParameterRef (class in biogeme.latent_variables.resolved) ResolvedStructuralEquation (class in biogeme.latent_variables.resolved) ResolvedThresholdSystem (class in biogeme.latent_variables.resolved) result (biogeme.profiling.benchmark.BenchmarkSeriesResult attribute) retrieve_saved_estimates() (biogeme.biogeme.BIOGEME method), [1] rhat (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) rho_bar_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_bar_square_null (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_null (biogeme.results_processing.estimation_results.EstimationResults property) ROBUST (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) robust_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) role (biogeme.latent_variables.resolved.ResolvedParameter attribute) rows_slice() (biogeme.database.panel_map.ContiguousPanelMap method) rules (biogeme.latent_variables.resolved.ResolvedNormalizationSummary attribute) run() (biogeme.assisted.AssistedSpecification method) run_benchmark() (in module biogeme.profiling.benchmark) run_sampling() (in module biogeme.bayesian_estimation.sampling) run_time (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property)

S

safe_beta_id (biogeme.expressions.beta_parameters.Beta property) safe_deserialize_array() (in module biogeme.tools.serialize_numpy) safe_draw_id (biogeme.expressions.draws.Draws property) safe_rv_id (biogeme.expressions.integrate.IntegrateNormal property) (biogeme.expressions.random_variable.RandomVariable property) safe_serialize_array() (in module biogeme.tools.serialize_numpy) safe_variable_id (biogeme.expressions.variable.Variable property) sample_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_and_merge() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) sample_from_prior (biogeme.biogeme.BIOGEME property) sample_mev_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_panel_with_replacement() (in module biogeme.database.sampling) sample_size (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) sample_with_replacement() (in module biogeme.database.sampling) sampler (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) SamplingConfig (class in biogeme.bayesian_estimation.sampling_strategy) SamplingContext (class in biogeme.sampling_of_alternatives.sampling_context) SamplingOfAlternatives (class in biogeme.sampling_of_alternatives.sampling_of_alternatives) save() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method) save_html_report() (in module biogeme.latent_variables.html_report) save_iterations (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) save_iterations() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) save_latex_report() (in module biogeme.latent_variables.latex_report) save_python_code() (in module biogeme.latent_variables.python_generator) save_text() (in module biogeme.latent_variables.io) save_validation_results (biogeme.biogeme.BIOGEME property) scale_column() (biogeme.database.container.Database method) scipy() (in module biogeme.optimization) scope (biogeme.latent_variables.resolved.ResolvedNormalizationRule attribute) second_call_time (biogeme.profiling.benchmark.BenchmarkCaseResult attribute) second_derivatives (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) SecondDerivativesMode (class in biogeme.second_derivatives) section (biogeme.default_parameters.ParameterTuple attribute) (biogeme.parameters.NameSectionTuple attribute) sections (biogeme.parameters.Parameters property) sections_from_name() (biogeme.parameters.Parameters method) seed (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) Segmentation (class in biogeme.segmentation.segmentation) segmentation_catalogs() (in module biogeme.catalog.segmentation_catalog) segmented_beta() (biogeme.segmentation.segmentation.Segmentation method) (in module biogeme.segmentation.segmented_beta) segmented_code() (biogeme.segmentation.segmentation.Segmentation method) SegmentedParameters (class in biogeme.catalog.segmentation_catalog) selected() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_expression() (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_name() (biogeme.expressions.multiple_expressions.MultipleExpression method) SelectedConfigurationsIterator (class in biogeme.catalog.catalog_iterator) selection (biogeme.catalog.configuration.SelectionTuple attribute) selections (biogeme.catalog.configuration.Configuration property) SelectionTuple (class in biogeme.catalog.configuration) semantic_ref (biogeme.latent_variables.resolved.ResolvedParameter attribute) (biogeme.latent_variables.resolved.ResolvedParameterRef attribute) serialize_to_yaml() (in module biogeme.results_processing.raw_estimation_results) set_configuration() (biogeme.catalog.central_controller.CentralController method) set_configuration_from_id() (biogeme.catalog.central_controller.CentralController method) set_controller() (biogeme.catalog.central_controller.CentralController method) set_diagnostic_figure_references() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) set_draw_dimension_for_all_draws() (in module biogeme.expressions.prepare_for_panel) set_draw_dimension_handler() (in module biogeme.expressions.prepare_for_panel) set_draw_per_individual() (biogeme.expressions.draws.Draws method) set_draw_per_observation() (biogeme.expressions.draws.Draws method) set_index() (biogeme.catalog.controller.Controller method) set_maximum_number_of_observations_per_individual() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) set_name() (biogeme.catalog.controller.Controller method) set_of_controllers() (biogeme.catalog.configuration.Configuration method) set_panel_column_on_distributed_parameters() (in module biogeme.expressions.prepare_for_panel) set_panel_id() (in module biogeme.expressions.set_panel_id) set_random_init_values() (biogeme.biogeme.BIOGEME method), [1] set_several_parameters() (biogeme.parameters.Parameters method)

set_specific_id() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.multiple_expressions.MultipleExpression method) set_value() (biogeme.parameters.Parameters method) short_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) sigma (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute) signatures (biogeme.profiling.jax_profile.FunctionProfile attribute) simple_bounds_newton_algorithm_for_biogeme() (in module biogeme.optimization) simulate() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.simulate) simulate_bayesian() (biogeme.biogeme.BIOGEME method), [1] simulated_values (biogeme.validation.cross_validation.ValidationResult attribute) sin (class in biogeme.expressions.sin) sin_phi (biogeme.tools.ellipse.Ellipse attribute) smallest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) smallest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) solution (biogeme.likelihood.model_estimation.AlgorithmResults attribute) sorting_utility_one_alternative() (biogeme.mdcev.generalized.Generalized method) source_parameter_names (biogeme.latent_variables.resolved.ResolvedCutpoint attribute) specific_id (biogeme.expressions.elementary_expressions.Elementary attribute) Specification (class in biogeme.catalog.specification) specifications (biogeme.latent_variables.model_spec.MeasurementConfiguration attribute) split() (in module biogeme.validation.prepare_validation) split_databases() (in module biogeme.validation.split_databases) split_validation_sets() (in module biogeme.database.sampling) start (biogeme.latent_variables.model_spec.PositiveParameterSpec attribute) start_time (biogeme.profiling.timing.TimedBlock attribute) starts (biogeme.database.panel_map.ContiguousPanelMap attribute) statement (biogeme.latent_variables.model_spec.LikertIndicator attribute) (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) statistic (biogeme.tools.likelihood_ratio.LRTuple attribute) status (biogeme.latent_variables.resolved.ResolvedParameter attribute) (biogeme.validity.Validity attribute) std_err (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) steptol (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) stored_variables_report (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) StratumTuple (class in biogeme.sampling_of_alternatives.sampling_context) structural_beta_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) STRUCTURAL_COEFFICIENT (biogeme.latent_variables.resolved.ParameterRole attribute) structural_draw_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) structural_equation (biogeme.latent_variables.model_spec.LatentVariable attribute) (biogeme.latent_variables.resolved.ResolvedLatentVariable attribute) STRUCTURAL_INTERCEPT (biogeme.latent_variables.resolved.ParameterRole attribute) structural_intercept_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) structural_prefix() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) structural_sigma (biogeme.latent_variables.model_spec.LatentVariable attribute) STRUCTURAL_SIGMA (biogeme.latent_variables.resolved.ParameterRole attribute) structural_sigma_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) StructuralCoefficient (class in biogeme.latent_variables.normalization_refs) StructuralEquation (class in biogeme.latent_variables.model_spec) StructuralIntercept (class in biogeme.latent_variables.normalization_refs) StructuralSigma (class in biogeme.latent_variables.normalization_refs) subset (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) suggest_scaling() (biogeme.database.container.Database method) sum_of_utilities() (biogeme.mdcev.mdcev.Mdcev method) summarize_array_variable() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) summary() (biogeme.profiling.benchmark.BenchmarkSeriesResult method) (biogeme.profiling.jax_profile.JaxExecutionProfile method) suppress_logs() (in module biogeme.biogeme_logging) symbol_name (biogeme.latent_variables.resolved.ResolvedCutpoint attribute) symm_halton2() (in module biogeme.draws.native_draws) symm_halton3() (in module biogeme.draws.native_draws) symm_halton5() (in module biogeme.draws.native_draws) symm_MLHS() (in module biogeme.draws.native_draws) symm_MLHS_anti() (in module biogeme.draws.native_draws) symm_uniform() (in module biogeme.draws.native_draws) symm_uniform_antithetic() (in module biogeme.draws.native_draws) symmetric (biogeme.latent_variables.model_spec.LikertType attribute) (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) SYMMETRIC (biogeme.latent_variables.resolved.ThresholdConstructionKind attribute) systematic_part (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) (biogeme.latent_variables.resolved.ResolvedStructuralEquation attribute)

T

target (biogeme.latent_variables.normalization_plan.Fixing attribute) target_accept (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) (biogeme.biogeme.BIOGEME property) target_name (biogeme.latent_variables.resolved.ResolvedNormalizationRule attribute) TemporaryFile (class in biogeme.tools.files) term (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) terms (biogeme.latent_variables.resolved.ResolvedLinearCombination attribute) tex_escape() (in module biogeme.latent_variables.tex_utils) tex_identifier() (in module biogeme.latent_variables.tex_utils) the_dimension (biogeme.likelihood.negative_likelihood.NegativeLikelihood attribute) the_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) threshold (biogeme.tools.likelihood_ratio.LRTuple attribute) THRESHOLD_DELTA (biogeme.latent_variables.resolved.ParameterRole attribute) threshold_delta_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) threshold_expressions (biogeme.latent_variables.biogeme_builder.BuiltBiogemeModel attribute) THRESHOLD_FIRST (biogeme.latent_variables.resolved.ParameterRole attribute) threshold_system_name (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) threshold_systems (biogeme.latent_variables.resolved.ResolvedModel attribute) threshold_tau1_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) ThresholdConstructionKind (class in biogeme.latent_variables.resolved) ThresholdDelta (class in biogeme.latent_variables.normalization_refs) ThresholdFirst (class in biogeme.latent_variables.normalization_refs) time_function() (biogeme.tools.time.Timing method) timed_call() (biogeme.profiling.jax_profile.JaxExecutionProfile method) (in module biogeme.profiling.timing) TimedBlock (class in biogeme.profiling.timing) timedelta_constructor() (in module biogeme.tools.yaml)

timedelta_representer() (in module biogeme.tools.yaml) timeit() (in module biogeme.tools.timeit_context_manager) timeit_old() (in module biogeme.tools.timeit_decorator) Times (class in biogeme.expressions.times) Timing (class in biogeme.tools.time) to_dict() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary method) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method) (biogeme.profiling.jax_profile.JaxExecutionProfile method) to_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) tolerance (biogeme.biogeme.BIOGEME attribute) (biogeme.biogeme.BIOGEME property) total_mev_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) total_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) total_time (biogeme.profiling.jax_profile.FunctionProfile attribute) transformed_utility() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Translated (class in biogeme.mdcev.translated) triangularpdf() (in module biogeme.distributions) two_controllers() (biogeme.catalog.central_controller.CentralController method) type (biogeme.default_parameters.ParameterTuple attribute) type_name (biogeme.latent_variables.model_spec.LikertIndicator attribute) (biogeme.latent_variables.model_spec.LikertType attribute) (biogeme.latent_variables.normalization_refs.ThresholdDelta attribute) (biogeme.latent_variables.normalization_refs.ThresholdFirst attribute) (biogeme.latent_variables.resolved.ResolvedMeasurementEquation attribute) (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) TypeOfElementaryExpression (class in biogeme.expressions.elementary_types) types_of_draws (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

U

UnaryMinus (class in biogeme.expressions.unary_minus) UnaryOperator (class in biogeme.expressions.unary_expressions) uniform_antithetic() (in module biogeme.draws.native_draws) uniformpdf() (in module biogeme.distributions) unique_entry() (biogeme.function_output.DisaggregateFunctionOutput method) unique_ids (biogeme.database.panel_map.ContiguousPanelMap attribute) unique_product() (in module biogeme.tools.unique_ids) upper_bound (biogeme.latent_variables.resolved.ResolvedParameter attribute) upper_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) use_flatten_database (biogeme.biogeme.BIOGEME property), [1] use_jit (biogeme.biogeme.BIOGEME property) used_by_indicators (biogeme.latent_variables.resolved.ResolvedThresholdSystem attribute) user_defined_validity_check (biogeme.catalog.specification.Specification attribute) user_notes (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

utility_expression_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) utility_function (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method)

V

validate() (biogeme.biogeme.BIOGEME method), [1] validate_and_convert() (in module biogeme.expressions.convert) validate_dict_types() (in module biogeme.tools.checks) validate_expression_type() (in module biogeme.expressions.validation) validate_forecast() (biogeme.mdcev.mdcev.Mdcev method) validate_normalization_plan() (in module biogeme.latent_variables.validation) validate_partition() (biogeme.partition.Partition method) validate_segments() (biogeme.partition.Partition method) validate_specification() (in module biogeme.latent_variables.validation) validation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) validation() (biogeme.mdcev.mdcev.Mdcev method) validation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) validation_one_alternative() (biogeme.mdcev.mdcev.Mdcev method) validation_one_alternative_one_consumption() (biogeme.mdcev.mdcev.Mdcev method) ValidationLevel (class in biogeme.latent_variables.validation) ValidationResult (class in biogeme.latent_variables.validation) (class in biogeme.validation.cross_validation)

Validity (class in biogeme.validity) value (biogeme.default_parameters.ParameterTuple attribute) (biogeme.expressions.numeric_expressions.Numeric attribute) (biogeme.latent_variables.normalization_plan.Fixing attribute) (biogeme.latent_variables.resolved.ResolvedConstant attribute) (biogeme.latent_variables.resolved.ResolvedNormalizationRule attribute) ValueOutOfRange VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) Variable (class in biogeme.expressions.variable) variable_name (biogeme.latent_variables.normalization_refs.StructuralCoefficient attribute) (biogeme.latent_variables.resolved.ResolvedLinearTerm attribute) variables (biogeme.expressions.linear_utility.LinearUtility attribute) (biogeme.expressions_registry.ExpressionRegistry property) variables_indices (biogeme.expressions_registry.ExpressionRegistry property) variance_covariance_missing (biogeme.results_processing.estimation_results.EstimationResults property) verify_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) version (biogeme.biogeme.BIOGEME property) visit() (biogeme.expressions.visitor.ExpressionVisitor method)

W

waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) waic_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) waic_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) walk() (biogeme.expressions.collectors.ExpressionCollector method) warm_up_runs (biogeme.tools.time.Timing property) warmup (biogeme.biogeme.BIOGEME property) WARNING (biogeme.latent_variables.validation.ValidationLevel attribute)

warning_cpu_devices() (in module biogeme.tools.jax_multicore) warnings (biogeme.audit_tuple.AuditTuple attribute) (biogeme.latent_variables.resolved.ResolvedNormalizationSummary attribute) weight (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) weight_name (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.model_elements.model_elements.ModelElements attribute) write_f12() (biogeme.results_processing.estimation_results.EstimationResults method) write_latex() (biogeme.results_processing.estimation_results.EstimationResults method)

X

x (biogeme.expressions.linear_utility.LinearTermTuple attribute)

Z

z_value (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute)

zero_one() (in module biogeme.check_parameters)