Index

A

add() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) add_alphas() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) add_column() (biogeme.database.container.Database method) add_multiline_comment() (in module biogeme.parameters) add_note() (biogeme.profiling.jax_profile.JaxExecutionProfile method) add_parameter() (biogeme.parameters.Parameters method) add_prefix_suffix_to_all_variables() (in module biogeme.expressions.add_prefix_suffix) add_suffix_to_all_variables() (biogeme.expressions.multiple_expressions.MultipleExpression method) add_trailing_zero() (in module biogeme.results_processing.latex_output) AIC_BIC_dimension() (in module biogeme.multiobjectives) aic_bic_dimension() (in module biogeme.multiobjectives) akaike_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) algo_parameters (biogeme.biogeme.BIOGEME property) algorithm_has_converged (biogeme.results_processing.estimation_results.EstimationResults property) AlgorithmResults (class in biogeme.likelihood.model_estimation) all_alpha_fixed() (biogeme.nests.OneNestForCrossNestedLogit method) all_alphas_fixed() (biogeme.nests.NestsForCrossNestedLogit method) all_configurations() (biogeme.catalog.controller.Controller method) all_parameters_tuple() (in module biogeme.default_parameters) all_results (biogeme.catalog.specification.Specification attribute) ALT (biogeme.expressions.bayesian.Dimension attribute) ANALYTICAL (biogeme.second_derivatives.SecondDerivativesMode attribute) analytical_hessian_mode (biogeme.biogeme.BIOGEME property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) And (class in biogeme.expressions.logical_and)

apply_parameter_overrides() (in module biogeme.expressions.parameter_overrides) are_derivatives_available (biogeme.results_processing.estimation_results.EstimationResults property) arviz_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) as_dict() (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticConfiguration method) as_list() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) assert_sets_equal() (in module biogeme.tools.checks) AssistedSpecification (class in biogeme.assisted) atomic_write_text() (in module biogeme.monte_carlo_diagnostic) atomic_write_yaml() (in module biogeme.monte_carlo_diagnostic) attributes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) audit() (biogeme.model_elements.model_elements.ModelElements method) audit_belongsto() (in module biogeme.expressions.audit) audit_chosen_alternative() (in module biogeme.model_elements.audit) audit_dataframe() (in module biogeme.database.audit) audit_default() (in module biogeme.expressions.audit) audit_draws() (in module biogeme.expressions.audit) audit_expression() (in module biogeme.expressions.audit) audit_integrate() (in module biogeme.expressions.audit) audit_loglogit() (in module biogeme.expressions.audit) audit_montecarlo() (in module biogeme.expressions.audit) audit_panel() (in module biogeme.model_elements.audit) audit_panel_dataframe() (in module biogeme.database.audit) audit_randomvariable() (in module biogeme.expressions.audit) audit_variables() (in module biogeme.model_elements.audit) AuditTuple (class in biogeme.audit_tuple)

B

BAYESIAN (biogeme.latent_variables.context.EstimationMode attribute) bayesian_cross_validate_model() (in module biogeme.validation.cross_validation) bayesian_draws (biogeme.biogeme.BIOGEME property) BAYESIAN_DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) bayesian_estimation() (biogeme.biogeme.BIOGEME method) bayesian_estimation_non_panel() (biogeme.biogeme.BIOGEME method) bayesian_estimation_or_load_summary() (biogeme.biogeme.BIOGEME method) bayesian_estimation_panel() (biogeme.biogeme.BIOGEME method) bayesian_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) BayesianResults (class in biogeme.bayesian_estimation.bayesian_results) BayesianResultsSummary (class in biogeme.bayesian_estimation.bayesian_results_summary) BelongsTo (class in biogeme.expressions.belongs_to) BenchmarkCaseResult (class in biogeme.profiling.benchmark) BenchmarkSeriesResult (class in biogeme.profiling.benchmark) best_draw_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) Beta (class in biogeme.expressions.beta_parameters) beta_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_expression() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_name() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_names (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) beta_ref_code() (biogeme.segmentation.segmentation.Segmentation method) bfgs_linesearch_for_biogeme() (in module biogeme.optimization) bfgs_trust_region_for_biogeme() (in module biogeme.optimization) bhhh (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) BHHH (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bhhh_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bhhhs (biogeme.function_output.DisaggregateFunctionOutput attribute) BinaryMax (class in biogeme.expressions.binary_max) BinaryMin (class in biogeme.expressions.binary_min) BinaryOperator (class in biogeme.expressions.binary_expressions) bio_bfgs() (in module biogeme.optimization) bio_newton() (in module biogeme.optimization) bioDraws() (in module biogeme.expressions.deprecated) BIOGEME (class in biogeme.biogeme) biogeme.assisted module biogeme.audit_tuple module biogeme.bayesian_estimation.bayesian_results module biogeme.bayesian_estimation.bayesian_results_summary module biogeme.bayesian_estimation.check_shape module biogeme.bayesian_estimation.html_output module biogeme.bayesian_estimation.pandas_output module biogeme.bayesian_estimation.raw_bayesian_results module biogeme.bayesian_estimation.sampling module biogeme.bayesian_estimation.sampling_strategy module biogeme.biogeme module biogeme.biogeme_logging module biogeme.catalog.catalog module biogeme.catalog.catalog_iterator module biogeme.catalog.central_controller module biogeme.catalog.configuration module biogeme.catalog.controller module biogeme.catalog.generic_alt_specific_catalog module biogeme.catalog.segmentation_catalog module biogeme.catalog.specification module biogeme.check_parameters module biogeme.cnl module biogeme.constants module biogeme.data.mdcev_data module biogeme.data.optima module biogeme.data.swissmetro module biogeme.database.audit module biogeme.database.container module biogeme.database.mdcev module biogeme.database.panel module biogeme.database.panel_map module biogeme.database.sampling module biogeme.default_parameters module biogeme.deprecated module biogeme.dict_of_formulas module biogeme.distributions module biogeme.draws.factory module biogeme.draws.generators module biogeme.draws.management module biogeme.draws.native_draws module biogeme.draws.pymc_draws module biogeme.exceptions module biogeme.expressions.add_prefix_suffix module biogeme.expressions.audit module biogeme.expressions.base_expressions module biogeme.expressions.bayesian module biogeme.expressions.belongs_to module biogeme.expressions.beta_parameters module biogeme.expressions.binary_expressions module biogeme.expressions.binary_max module biogeme.expressions.binary_min module biogeme.expressions.boxcox module biogeme.expressions.collectors module biogeme.expressions.comparison_expressions module biogeme.expressions.conditional_sum module biogeme.expressions.convert module biogeme.expressions.cos module biogeme.expressions.deprecated module biogeme.expressions.derive module biogeme.expressions.distributed_parameter module biogeme.expressions.divide module biogeme.expressions.draws module biogeme.expressions.elem module biogeme.expressions.elementary_expressions module biogeme.expressions.elementary_types module biogeme.expressions.exp module biogeme.expressions.expm1 module biogeme.expressions.individual_draws module biogeme.expressions.integrate module biogeme.expressions.jax_utils module biogeme.expressions.linear_utility module biogeme.expressions.log module biogeme.expressions.log_cross_nested module biogeme.expressions.log_domain_cnl module biogeme.expressions.log_nested module biogeme.expressions.log_sampled_cross_nested module biogeme.expressions.log_sampled_logit module biogeme.expressions.log_sampled_nested module biogeme.expressions.logical_and module biogeme.expressions.logical_or module biogeme.expressions.logit_expressions module biogeme.expressions.logzero module biogeme.expressions.minus module biogeme.expressions.montecarlo module biogeme.expressions.multiple_expressions module biogeme.expressions.multiple_product module biogeme.expressions.multiple_sum module biogeme.expressions.named_expression module biogeme.expressions.normalcdf module biogeme.expressions.numeric_expressions module biogeme.expressions.numeric_tools module biogeme.expressions.ordered module biogeme.expressions.panel_likelihood_trajectory module biogeme.expressions.panel_log_likelihood module biogeme.expressions.parameter_overrides module biogeme.expressions.plus module biogeme.expressions.power module biogeme.expressions.power_constant module biogeme.expressions.prepare_for_panel module biogeme.expressions.random_variable module biogeme.expressions.rename_variables module biogeme.expressions.set_panel_id module biogeme.expressions.sin module biogeme.expressions.sparse_log_cross_nested module biogeme.expressions.times module biogeme.expressions.unary_expressions module

biogeme.expressions.unary_minus module biogeme.expressions.validation module biogeme.expressions.variable module biogeme.expressions.visitor module biogeme.expressions.weighted_logsum_exp module biogeme.expressions_registry module biogeme.filenames module biogeme.floating_point module biogeme.function_output module biogeme.jax_calculator.function_call module biogeme.jax_calculator.multiple_formula module biogeme.jax_calculator.simple_formula module biogeme.jax_calculator.single_formula module biogeme.latent_variables.biogeme_builder module biogeme.latent_variables.context module biogeme.latent_variables.html_report module biogeme.latent_variables.io module biogeme.latent_variables.latex_report module biogeme.latent_variables.model_spec module biogeme.latent_variables.naming module biogeme.latent_variables.normalization_plan module biogeme.latent_variables.normalization_refs module biogeme.latent_variables.python_generator module biogeme.latent_variables.resolved module biogeme.latent_variables.resolver module biogeme.latent_variables.tex_utils module biogeme.latent_variables.validation module biogeme.likelihood.bootstrap module biogeme.likelihood.linear_regression module biogeme.likelihood.model_estimation module biogeme.likelihood.negative_likelihood module biogeme.loglikelihood module biogeme.lsh module biogeme.mdcev.database_utils module biogeme.mdcev.gamma_profile module biogeme.mdcev.generalized module biogeme.mdcev.mdcev module biogeme.mdcev.non_monotonic module biogeme.mdcev.translated module biogeme.model_elements.audit module biogeme.model_elements.database_adapter module biogeme.model_elements.model_elements module biogeme.models.boxcox module biogeme.models.cnl module biogeme.models.cnl_slow module biogeme.models.logit module biogeme.models.mev module biogeme.models.nested module biogeme.models.nested_slow module biogeme.models.ordered module biogeme.models.piecewise module biogeme.monte_carlo_diagnostic module biogeme.multiobjectives module biogeme.nests module biogeme.optimization module biogeme.parameters module biogeme.partition module biogeme.profiling.benchmark module biogeme.profiling.environment module biogeme.profiling.jax_profile module biogeme.profiling.timing module biogeme.pymc_calculator module biogeme.results module biogeme.results_processing.compilation module biogeme.results_processing.estimation_results module biogeme.results_processing.f12_output module biogeme.results_processing.html_output module biogeme.results_processing.latex_output module biogeme.results_processing.pandas_output module biogeme.results_processing.pareto module biogeme.results_processing.raw_estimation_results module biogeme.results_processing.recycle_pickle module biogeme.results_processing.variance_covariance module biogeme.sampling_of_alternatives.choice_set_generation module biogeme.sampling_of_alternatives.generate_model module biogeme.sampling_of_alternatives.generate_model_slow module biogeme.sampling_of_alternatives.sampling_context module biogeme.sampling_of_alternatives.sampling_of_alternatives module biogeme.second_derivatives module biogeme.segmentation.database module biogeme.segmentation.one_segmentation module biogeme.segmentation.segmentation module biogeme.segmentation.segmentation_context module biogeme.segmentation.segmented_beta module biogeme.tools.checks module biogeme.tools.database module biogeme.tools.derivatives module biogeme.tools.ellipse module biogeme.tools.files module biogeme.tools.formatting module biogeme.tools.jax_multicore module biogeme.tools.likelihood_ratio module biogeme.tools.pandas_to_latex module biogeme.tools.primes module biogeme.tools.pymc_utils module biogeme.tools.serialize_numpy module biogeme.tools.simulate module biogeme.tools.time module biogeme.tools.timeit_context_manager module biogeme.tools.timeit_decorator module biogeme.tools.unique_ids module biogeme.tools.yaml module biogeme.validation.cross_validation module biogeme.validation.prepare_validation module biogeme.validation.split_databases module biogeme.validity module biogeme.version module BiogemeError BiogemeUnpickler (class in biogeme.results_processing.recycle_pickle) bioLinearUtility() (in module biogeme.expressions.deprecated) bioMax() (in module biogeme.expressions.deprecated) bioMin() (in module biogeme.expressions.deprecated) bioMultSum() (in module biogeme.expressions.deprecated) bioNormalCdf() (in module biogeme.expressions.deprecated) bioResults (class in biogeme.results) block_until_ready() (in module biogeme.profiling.timing) BOOTSTRAP (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bootstrap() (in module biogeme.likelihood.bootstrap) bootstrap_complete (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) bootstrap_sample() (biogeme.database.container.Database method) bootstrap_samples (biogeme.biogeme.BIOGEME property) bootstrap_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) BOUNDED_BETA (biogeme.latent_variables.resolved.ParameterCreationKind attribute) bounds (biogeme.expressions_registry.ExpressionRegistry property) BoxCox (class in biogeme.expressions.boxcox) boxcox() (in module biogeme.models.boxcox) broadcast() (biogeme.expressions_registry.ExpressionRegistry method) build_biogeme_model() (in module biogeme.latent_variables.biogeme_builder) build_contiguous_panel_map() (in module biogeme.database.panel_map) build_count (biogeme.profiling.jax_profile.FunctionProfile attribute) build_draw_schedule() (in module biogeme.monte_carlo_diagnostic) build_linear_terms() (in module biogeme.likelihood.linear_regression) build_normalized_formula() (in module biogeme.likelihood.linear_regression) build_ordered_thresholds() (in module biogeme.models.ordered) build_registry() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) build_tasks() (in module biogeme.monte_carlo_diagnostic) build_vectorized_function() (in module biogeme.expressions.jax_utils) BuildContext (class in biogeme.latent_variables.context) BuiltBiogemeModel (class in biogeme.latent_variables.biogeme_builder)

C

calc_p_value() (in module biogeme.results_processing.estimation_results) calculate_baseline_utility() (biogeme.mdcev.mdcev.Mdcev method) calculate_init_likelihood() (biogeme.biogeme.BIOGEME method) calculate_inverse_of_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_inverse_of_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_likelihood (biogeme.biogeme.BIOGEME property) calculate_log_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_log_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_loo (biogeme.biogeme.BIOGEME property) calculate_mu_utility() (biogeme.mdcev.non_monotonic.NonMonotonic method) calculate_null_loglikelihood() (biogeme.biogeme.BIOGEME method) calculate_prime_numbers() (in module biogeme.tools.primes) calculate_single_formula() (in module biogeme.jax_calculator.single_formula) calculate_single_formula_from_expression() (in module biogeme.jax_calculator.single_formula) calculate_test() (biogeme.results_processing.estimation_results.EstimationResults method) calculate_utilities() (biogeme.mdcev.mdcev.Mdcev method) calculate_waic (biogeme.biogeme.BIOGEME property) calculates_correlation_matrix() (in module biogeme.results_processing.estimation_results) calculates_estimated_values() (biogeme.segmentation.segmentation.Segmentation method) calculating_second_derivatives (biogeme.biogeme.BIOGEME property) call_count (biogeme.profiling.jax_profile.FunctionProfile attribute) CallableExpression (class in biogeme.jax_calculator.function_call) Catalog (class in biogeme.catalog.catalog) catalog_size() (biogeme.expressions.multiple_expressions.MultipleExpression method) CatalogItem (class in biogeme.expressions.multiple_expressions) central_controller (biogeme.catalog.specification.Specification attribute) CentralController (class in biogeme.catalog.central_controller) chains (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property) change_init_values() (biogeme.biogeme.BIOGEME method) (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.multiple_expressions.MultipleExpression method) check_algo_name() (in module biogeme.check_parameters) check_analytical_hessian_mode() (in module biogeme.check_parameters) check_availability_of_chosen_alt() (in module biogeme.database.audit) check_calculating_second_derivatives() (in module biogeme.check_parameters) check_consistency_of_named_dicts() (in module biogeme.tools.checks) check_derivatives() (biogeme.biogeme.BIOGEME method) (in module biogeme.tools.derivatives) check_expression() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_for_invalid_yaml_values() (in module biogeme.tools.yaml) check_intersection() (biogeme.nests.NestsForNestedLogit method) check_mev_partition() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_monte_carlo_stability() (biogeme.biogeme.BIOGEME method) check_names() (biogeme.nests.Nests method) check_parameter_value() (biogeme.parameters.Parameters static method) check_partition() (biogeme.nests.NestsForNestedLogit method) (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_sampling_strategy() (in module biogeme.check_parameters)

check_shape() (in module biogeme.bayesian_estimation.check_shape) check_union() (biogeme.nests.Nests method) check_valid_alternatives() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_validity() (biogeme.nests.NestsForCrossNestedLogit method) (in module biogeme.dict_of_formulas) CheckDerivativesResults (class in biogeme.tools.derivatives) choice_availability_statistics() (in module biogeme.database.audit) ChoiceSetsGeneration (class in biogeme.sampling_of_alternatives.choice_set_generation) ChosenAvailable (class in biogeme.database.audit) cnl() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) cnl_avail() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) cnl_CDF() (in module biogeme.cnl) cnl_cdf() (in module biogeme.cnl) cnl_G() (in module biogeme.cnl) cnl_g() (in module biogeme.cnl) cnl_nests (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) cnlmu() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) collect_init_values() (in module biogeme.expressions.collectors) column_exists() (biogeme.database.container.Database method) compare_parameters() (in module biogeme.results_processing.latex_output) ComparisonOperator (class in biogeme.expressions.comparison_expressions) compile_estimation_results() (in module biogeme.results_processing.compilation) compile_results_in_directory() (in module biogeme.results_processing.compilation) CompiledFormulaEvaluator (class in biogeme.jax_calculator.single_formula) complete_dict_of_free_beta_values() (biogeme.expressions_registry.ExpressionRegistry method) complete_estimation_results() (biogeme.biogeme.BIOGEME method) condition_number (biogeme.results_processing.estimation_results.EstimationResults property) ConditionalSum (class in biogeme.expressions.conditional_sum) ConditionalTermTuple (class in biogeme.expressions.conditional_sum) confidence_intervals() (biogeme.biogeme.BIOGEME method) config_id (biogeme.catalog.specification.Specification property) Configuration (class in biogeme.catalog.configuration) configure_expression() (biogeme.catalog.specification.Specification method) ConflictPolicy (class in biogeme.latent_variables.normalization_plan) contains_log_likelihood() (biogeme.biogeme.BIOGEME method) contains_python_tags() (in module biogeme.tools.yaml) ContiguousPanelMap (class in biogeme.database.panel_map) Controller (class in biogeme.catalog.controller) controller_size() (biogeme.catalog.controller.Controller method) convert_random_generator_tuple() (in module biogeme.draws.native_draws) convert_to_dict() (in module biogeme.function_output) correlation() (biogeme.nests.NestsForCrossNestedLogit method) (biogeme.nests.NestsForNestedLogit method) cos (class in biogeme.expressions.cos) count_cpu_devices() (in module biogeme.tools.jax_multicore) count_number_of_groups() (in module biogeme.tools.database) count_number_of_specifications() (in module biogeme.catalog.central_controller) countNumberOfGroups() (in module biogeme.tools.database) covariance() (biogeme.nests.NestsForCrossNestedLogit method) create_backup() (in module biogeme.tools.files) create_function_simple_expression() (in module biogeme.jax_calculator.simple_formula) cross_validate_model() (in module biogeme.validation.cross_validation) CrossVariableTuple (class in biogeme.sampling_of_alternatives.sampling_context) current_name() (biogeme.catalog.controller.Controller method) CutpointKind (class in biogeme.latent_variables.resolved)

D

data_jax (biogeme.database.container.Database property) data_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) database (biogeme.catalog.specification.Specification attribute) (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) Database (class in biogeme.database.container) dataframe (biogeme.database.container.Database property) dataframe_to_latex_decimal() (in module biogeme.tools.pandas_to_latex) decreased_controller() (biogeme.catalog.central_controller.CentralController method) deep_flat_copy() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.log_cross_nested.LogCrossNested method) (biogeme.expressions.log_nested.LogNested method) (biogeme.expressions.log_sampled_cross_nested.LogSampleCrossNested method) (biogeme.expressions.log_sampled_logit.LogSampledLogit method) (biogeme.expressions.log_sampled_nested.LogSampledNested method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp method)

default() (biogeme.latent_variables.context.BuildContext static method) default_specification() (biogeme.catalog.specification.Specification class method) DefaultNamingPolicy (class in biogeme.latent_variables.naming) define_new_variables() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) define_variable() (biogeme.database.container.Database method) DefineVariable() (biogeme.database.container.Database method) delegate_to_selected() (in module biogeme.expressions.multiple_expressions) deprecated() (in module biogeme.deprecated) deprecated_parameters() (in module biogeme.deprecated) deprecated_wrapper() (in module biogeme.expressions.deprecated) derivative_utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Derive (class in biogeme.expressions.derive) DERIVED (biogeme.latent_variables.resolved.CutpointKind attribute) describe() (biogeme.catalog.specification.Specification method) describe_strategies() (in module biogeme.bayesian_estimation.sampling_strategy) description_of_native_draws() (in module biogeme.draws.native_draws) deserialize_from_yaml() (in module biogeme.results_processing.raw_estimation_results) Diagnostic (class in biogeme.latent_variables.validation) diagnostic_conclusion (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticResult property) diagnostic_conclusion() (in module biogeme.monte_carlo_diagnostic) diagnostic_figure_references (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) diagnostic_task_seed() (in module biogeme.monte_carlo_diagnostic) Dimension (class in biogeme.expressions.bayesian) dimension() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) DisaggregateFunctionOutput (class in biogeme.function_output) DiscreteSegmentationTuple (class in biogeme.segmentation.segmentation_context) display_messages() (in module biogeme.audit_tuple) DistributedParameter (class in biogeme.expressions.distributed_parameter) Divide (class in biogeme.expressions.divide) documentation (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary attribute) dogleg (biogeme.biogeme.BIOGEME property) draw_confidence_ellipse() (in module biogeme.results_processing.latex_output) draw_dimension (biogeme.expressions.draws.Draws property) draw_ellipse() (in module biogeme.tools.ellipse) draw_types() (biogeme.expressions_registry.ExpressionRegistry method) DrawFactory (class in biogeme.draws.factory) draws (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) draws (biogeme.expressions_registry.ExpressionRegistry property) Draws (class in biogeme.expressions.draws) draws_indices (biogeme.expressions_registry.ExpressionRegistry property) draws_jax (biogeme.draws.management.DrawsManagement property) draws_management (biogeme.model_elements.model_elements.ModelElements property) draws_names (biogeme.expressions_registry.ExpressionRegistry property) DrawsManagement (class in biogeme.draws.management) DrawSpec (class in biogeme.draws.factory) dummy_database() (biogeme.database.container.Database class method) dump() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) dump_file() (biogeme.parameters.Parameters method) dump_yaml() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) dump_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults method) DuplicateError

E

eigen_structure() (biogeme.results_processing.estimation_results.EstimationResults method) elapsed (biogeme.profiling.timing.TimedBlock attribute) Elem (class in biogeme.expressions.elem) Elementary (class in biogeme.expressions.elementary_expressions) ElementsTuple (class in biogeme.expressions_registry) Ellipse (class in biogeme.tools.ellipse) embed_expression() (biogeme.expressions.base_expressions.Expression method) EmptyListOfParameters enabled (biogeme.profiling.jax_profile.JaxExecutionProfile attribute) enlarging_factor (biogeme.biogeme.BIOGEME property) ensure_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) Equal (class in biogeme.expressions.comparison_expressions) ERROR (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute) (biogeme.latent_variables.validation.ValidationLevel attribute) errors (biogeme.latent_variables.validation.ValidationResult property) estimate() (biogeme.biogeme.BIOGEME method) estimate_catalog() (biogeme.biogeme.BIOGEME method) estimate_or_load() (biogeme.biogeme.BIOGEME method) estimate_parameters() (biogeme.mdcev.mdcev.Mdcev method) EstimatedBeta (class in biogeme.bayesian_estimation.bayesian_results) EstimatedBetaSummary (class in biogeme.bayesian_estimation.bayesian_results_summary) EstimateVarianceCovariance (class in biogeme.results_processing.variance_covariance) estimation_results (biogeme.mdcev.mdcev.Mdcev property) EstimationMode (class in biogeme.latent_variables.context) EstimationResults (class in biogeme.results_processing.estimation_results) EstimationValidationIndices (class in biogeme.validation.prepare_validation) EstimationValidationModels (class in biogeme.validation.split_databases) evaluate() (biogeme.jax_calculator.multiple_formula.MultiRowEvaluator method) (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_chunked_hessian() (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_expression() (in module biogeme.jax_calculator.single_formula)

evaluate_formula() (in module biogeme.jax_calculator.single_formula) evaluate_individual() (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_model_per_row() (in module biogeme.jax_calculator.single_formula) evaluate_simple_expression() (in module biogeme.jax_calculator.simple_formula) evaluate_simple_expression_per_row() (in module biogeme.jax_calculator.simple_formula) execution_status (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticResult property) exp (class in biogeme.expressions.exp) expected_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) expm1 (class in biogeme.expressions.expm1) expression (biogeme.catalog.specification.Specification attribute) Expression (class in biogeme.expressions.base_expressions) expression_configuration_iterator() (biogeme.catalog.central_controller.CentralController method) expression_iterator() (biogeme.catalog.central_controller.CentralController method) expression_to_value() (in module biogeme.expressions.convert) expression_type (biogeme.expressions.beta_parameters.Beta property) (biogeme.expressions.draws.Draws attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.random_variable.RandomVariable attribute) (biogeme.expressions.variable.Variable attribute) ExpressionCollector (class in biogeme.expressions.collectors) ExpressionRegistry (class in biogeme.expressions_registry) expressions (biogeme.expressions_registry.ExpressionRegistry property) expressions_names_indices() (in module biogeme.expressions_registry) expressions_registry (biogeme.biogeme.BIOGEME property) (biogeme.model_elements.model_elements.ModelElements property) ExpressionVisitor (class in biogeme.expressions.visitor) extract_multiple_expressions_controllers() (in module biogeme.catalog.central_controller) extract_rows() (biogeme.database.container.Database method) extract_slice() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method)

F

FileNotFound files_of_type() (in module biogeme.tools.files) final_loglikelihood (biogeme.results_processing.estimation_results.EstimationResults property) find_class() (biogeme.results_processing.recycle_pickle.BiogemeUnpickler method) findiff_g() (in module biogeme.tools.derivatives) findiff_h() (in module biogeme.tools.derivatives) FINITE_DIFFERENCES (biogeme.second_derivatives.SecondDerivativesMode attribute) first_call_time (biogeme.profiling.jax_profile.FunctionProfile attribute) fix_betas() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) FIXED (biogeme.latent_variables.resolved.CutpointKind attribute) (biogeme.latent_variables.resolved.ParameterStatus attribute) FIXED_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) (biogeme.latent_variables.resolved.ParameterCreationKind attribute) fixed_betas (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_values (biogeme.expressions_registry.ExpressionRegistry property) Fixing (class in biogeme.latent_variables.normalization_plan) FlatPanelAdapter (class in biogeme.model_elements.database_adapter) flatten_database() (biogeme.database.panel.PanelDatabase method) (in module biogeme.tools.database) forecast() (biogeme.mdcev.mdcev.Mdcev method) forecast_bisection_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_bruteforce_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_comparison_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_remaining_seconds() (in module biogeme.monte_carlo_diagnostic) format_comment() (in module biogeme.parameters) format_elapsed_time() (in module biogeme.tools.time) format_memory_size() (in module biogeme.tools.formatting) format_real_number() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) (in module biogeme.results_processing.latex_output) format_timedelta() (in module biogeme.tools.time) format_with_period() (in module biogeme.results_processing.latex_output) formula_names (biogeme.model_elements.model_elements.ModelElements property)

FREE (biogeme.latent_variables.resolved.CutpointKind attribute) (biogeme.latent_variables.resolved.ParameterStatus attribute) FREE_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) (biogeme.latent_variables.resolved.ParameterCreationKind attribute) free_betas (biogeme.expressions_registry.ExpressionRegistry property) free_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) free_betas_names (biogeme.biogeme.BIOGEME property) (biogeme.expressions_registry.ExpressionRegistry property) (biogeme.model_elements.model_elements.ModelElements property) free_parameters() (biogeme.latent_variables.resolved.ResolvedModel method) from_configuration() (biogeme.biogeme.BIOGEME class method) from_configuration_and_controller() (biogeme.biogeme.BIOGEME class method) from_dict() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary class method) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary class method) (biogeme.catalog.catalog.Catalog class method) (biogeme.catalog.configuration.Configuration class method) from_expression_and_weight() (biogeme.model_elements.model_elements.ModelElements class method) from_netcdf() (biogeme.bayesian_estimation.bayesian_results.BayesianResults class method) from_parameters() (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticConfiguration class method) from_pickle_file() (biogeme.results_processing.estimation_results.EstimationResults class method) from_string() (biogeme.catalog.configuration.Configuration class method) from_string_id() (biogeme.catalog.specification.Specification class method) from_tuple() (biogeme.draws.native_draws.RandomNumberGeneratorTuple class method) (biogeme.nests.OneNestForCrossNestedLogit class method) (biogeme.nests.OneNestForNestedLogit class method) from_tuple_of_configurations() (biogeme.catalog.configuration.Configuration class method) from_yaml_file() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary class method) (biogeme.results_processing.estimation_results.EstimationResults class method) function (biogeme.function_output.NamedFunctionOutput attribute) function_evaluator (biogeme.biogeme.BIOGEME property) function_from_compiled_formula() (in module biogeme.jax_calculator.function_call) function_from_expression() (in module biogeme.jax_calculator.function_call) function_parameters (biogeme.biogeme.BIOGEME property) FunctionOutput (class in biogeme.function_output) FunctionProfile (class in biogeme.profiling.jax_profile)

G

GammaProfile (class in biogeme.mdcev.gamma_profile) GAUSSIAN (biogeme.latent_variables.model_spec.MeasurementModel attribute) (biogeme.latent_variables.resolved.MeasurementErrorDistribution attribute) Generalized (class in biogeme.mdcev.generalized) generate_diagnostic_draws() (in module biogeme.monte_carlo_diagnostic) generate_document() (biogeme.parameters.Parameters method) generate_draws() (biogeme.draws.factory.DrawFactory method) (biogeme.draws.management.DrawsManagement method) generate_epsilons() (biogeme.mdcev.mdcev.Mdcev method) generate_f12_file() (in module biogeme.results_processing.f12_output) generate_general_information() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) generate_html (biogeme.biogeme.BIOGEME property) generate_html_file() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) generate_html_file_from_results() (in module biogeme.bayesian_estimation.html_output) generate_html_report() (in module biogeme.latent_variables.html_report) generate_html_simulated_data() (in module biogeme.bayesian_estimation.html_output) generate_latex_file() (in module biogeme.results_processing.latex_output) generate_latex_file_content() (in module biogeme.results_processing.latex_output) generate_latex_report() (in module biogeme.latent_variables.latex_report) generate_markdown_report() (in module biogeme.monte_carlo_diagnostic) generate_named_output() (biogeme.model_elements.model_elements.ModelElements method) generate_netcdf (biogeme.biogeme.BIOGEME property) generate_one_row() (in module biogeme.bayesian_estimation.html_output) generate_operator() (biogeme.assisted.AssistedSpecification method) generate_pickle (biogeme.biogeme.BIOGEME property) generate_python_code() (in module biogeme.latent_variables.python_generator) generate_segment_size() (in module biogeme.sampling_of_alternatives.sampling_of_alternatives) generate_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) generate_unique_ids() (in module biogeme.tools.unique_ids) generate_utility() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) (biogeme.sampling_of_alternatives.generate_model_slow.GenerateModel method) generate_yaml (biogeme.biogeme.BIOGEME property) GenerateModel (class in biogeme.sampling_of_alternatives.generate_model) (class in biogeme.sampling_of_alternatives.generate_model_slow) generic_alt_specific_catalogs() (in module biogeme.catalog.generic_alt_specific_catalog) generic_name (biogeme.catalog.specification.Specification attribute) get() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) get_all_controllers() (biogeme.catalog.catalog.Catalog method) get_alpha_dict() (biogeme.nests.NestsForCrossNestedLogit method) get_alpha_values() (biogeme.nests.NestsForCrossNestedLogit method) get_antithetic() (in module biogeme.draws.generators) get_attributes_from_expression() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) get_beta() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_beta_ref_name() (biogeme.segmentation.segmentation.Segmentation method) get_beta_values() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) get_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_betas_for_sensitivity_analysis() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) get_children() (biogeme.expressions.base_expressions.Expression method) get_class_name() (biogeme.expressions.base_expressions.Expression method) get_column() (biogeme.database.container.Database method) get_complete_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_confidence_ellipse() (biogeme.results_processing.estimation_results.EstimationResults method) get_configuration() (biogeme.catalog.central_controller.CentralController method) get_copy() (biogeme.database.container.Database method) get_cross_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) (biogeme.sampling_of_alternatives.generate_model_slow.GenerateModel method) get_default_value() (in module biogeme.parameters) get_default_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_diagnostic_figure_references() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_dict_expressions() (in module biogeme.expressions.convert) get_dict_values() (in module biogeme.expressions.convert) get_distribution() (in module biogeme.draws.pymc_draws) get_element() (biogeme.catalog.specification.Specification method) get_elementary_expression() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_estimated_parameters() (biogeme.results_processing.estimation_results.EstimationResults method) get_expression() (in module biogeme.dict_of_formulas) get_f12() (in module biogeme.results_processing.f12_output) get_file_logger() (in module biogeme.biogeme_logging) get_file_size() (in module biogeme.tools.files) get_fixing() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) get_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) get_generator() (biogeme.draws.factory.DrawFactory method) get_halton_draws() (in module biogeme.draws.generators) get_html() (biogeme.catalog.configuration.Configuration method) (in module biogeme.version) get_html_arviz_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_arviz_reproduction_instructions() (in module biogeme.bayesian_estimation.html_output) get_html_condition_number() (in module biogeme.results_processing.html_output) get_html_correlation_results() (in module biogeme.results_processing.html_output) get_html_estimated_parameters() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_footer() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_general_statistics() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_header() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_identification_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_one_pair_of_parameters() (in module biogeme.results_processing.html_output) get_html_one_parameter() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_preamble() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_identification_diagnostics_summary() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_index() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_iterator() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_latex() (in module biogeme.version) get_latex_estimated_parameters() (in module biogeme.results_processing.latex_output) get_latex_general_statistics() (in module biogeme.results_processing.latex_output) get_latex_one_parameter() (in module biogeme.results_processing.latex_output) get_latex_preamble() (in module biogeme.results_processing.latex_output) get_latin_hypercube_draws() (in module biogeme.draws.generators) get_list_of_available_distributions() (in module biogeme.draws.pymc_draws) get_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) (biogeme.sampling_of_alternatives.generate_model_slow.GenerateModel method)

get_lsh_weights() (in module biogeme.lsh) get_mev_for_cross_nested() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) get_mev_for_cross_nested_mu() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) get_mev_for_nested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) get_mev_for_nested_mu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) get_mev_generating_for_nested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) get_named_betas_values() (biogeme.expressions_registry.ExpressionRegistry method) get_nest() (in module biogeme.nests) get_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) (biogeme.sampling_of_alternatives.generate_model_slow.GenerateModel method) get_new_file_name() (in module biogeme.filenames) get_normal_wichura_draws() (in module biogeme.draws.generators) get_operator_decreased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_increased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_two_controllers() (biogeme.catalog.central_controller.CentralController method) get_pandas_correlation_results() (in module biogeme.results_processing.pandas_output) get_pandas_estimated_parameters() (in module biogeme.bayesian_estimation.pandas_output) (in module biogeme.results_processing.pandas_output) get_pandas_one_pair_of_parameters() (in module biogeme.results_processing.pandas_output) get_pandas_one_parameter() (in module biogeme.results_processing.pandas_output) get_pandas_other_variables() (in module biogeme.bayesian_estimation.pandas_output) get_param_tuple() (biogeme.parameters.Parameters method) get_parameter_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_prime_numbers() (in module biogeme.tools.primes) get_reference_beta() (biogeme.segmentation.segmentation.Segmentation method) get_results() (biogeme.catalog.specification.Specification method) get_screen_logger() (in module biogeme.biogeme_logging) get_selection() (biogeme.catalog.configuration.Configuration method) get_sign_for_p_value() (in module biogeme.results_processing.latex_output) get_string_id() (biogeme.catalog.configuration.Configuration method) get_sub_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_text() (in module biogeme.version) get_uniform() (in module biogeme.draws.generators) get_user_notes() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) get_value() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.log.log method) (biogeme.expressions.log_cross_nested.LogCrossNested method) (biogeme.expressions.log_nested.LogNested method) (biogeme.expressions.log_sampled_cross_nested.LogSampleCrossNested method) (biogeme.expressions.log_sampled_logit.LogSampledLogit method) (biogeme.expressions.log_sampled_nested.LogSampledNested method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp method) (biogeme.parameters.Parameters method) get_value_and_derivatives() (in module biogeme.jax_calculator.single_formula) get_value_c() (in module biogeme.jax_calculator.single_formula) get_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_version() (in module biogeme.version) getHtml() (in module biogeme.version) getLaTeX() (in module biogeme.version) getMevForCrossNested() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) getMevForCrossNestedMu() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) getMevForNested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) getMevForNestedMu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) getMevGeneratingForNested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) getText() (in module biogeme.version) getValue() (biogeme.expressions.logit_expressions.LogLogit method) getVersion() (in module biogeme.version) gradient (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) gradient_bhhh_complete (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) gradient_norm (biogeme.results_processing.estimation_results.EstimationResults property) gradients (biogeme.function_output.DisaggregateFunctionOutput attribute) Greater (class in biogeme.expressions.comparison_expressions) GreaterOrEqual (class in biogeme.expressions.comparison_expressions)

H

halton2() (in module biogeme.draws.native_draws) halton3() (in module biogeme.draws.native_draws) halton5() (in module biogeme.draws.native_draws) has_antithetic_draws() (in module biogeme.monte_carlo_diagnostic) has_posterior_draws (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) hessian (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute)

hessian_complete (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) hessian_memory_fraction (biogeme.biogeme.BIOGEME property) hessian_observation_batch_size (biogeme.biogeme.BIOGEME property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) hessian_parameter_block_size (biogeme.biogeme.BIOGEME property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) hessians (biogeme.function_output.DisaggregateFunctionOutput attribute)

I

idata (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) identification_chosen_alternatives() (biogeme.mdcev.mdcev.Mdcev method) identification_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) identification_diagnostics_summary (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) identification_threshold (biogeme.biogeme.BIOGEME property) IGNORE_SAME (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute) import_document() (biogeme.parameters.Parameters method) include_cnl_alphas() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) increased_controller() (biogeme.catalog.central_controller.CentralController method) index_of() (in module biogeme.expressions.log_cross_nested) (in module biogeme.expressions.log_nested) (in module biogeme.expressions.logit_expressions) IndicatorMeasurementSpec (class in biogeme.latent_variables.model_spec) individual_draws() (in module biogeme.expressions.individual_draws) individual_draws_handler() (in module biogeme.expressions.individual_draws) INDIVIDUALS (biogeme.expressions.bayesian.Dimension attribute) infeasible_cg (biogeme.biogeme.BIOGEME property) info_gamma_parameters() (biogeme.mdcev.mdcev.Mdcev method) initial_radius (biogeme.biogeme.BIOGEME property) insert_valid_keyword() (in module biogeme.dict_of_formulas) Integrate() (in module biogeme.expressions.deprecated)

IntegrateNormal (class in biogeme.expressions.integrate) intersection() (biogeme.nests.OneNestForNestedLogit method) is_any_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_boolean() (in module biogeme.check_parameters) is_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_complex() (biogeme.expressions.base_expressions.Expression method) is_empty() (biogeme.database.container.Database method) is_fixed (biogeme.expressions.beta_parameters.Beta property) is_fixed() (biogeme.latent_variables.normalization_plan.NormalizationPlan method) is_free (biogeme.expressions.beta_parameters.Beta property) is_hessian_available (biogeme.results_processing.estimation_results.EstimationResults property) is_integer() (in module biogeme.check_parameters) is_model_complex() (biogeme.biogeme.BIOGEME method) is_next_alternative_chosen() (biogeme.mdcev.mdcev.Mdcev method) is_non_negative() (in module biogeme.check_parameters) is_number() (in module biogeme.check_parameters) is_numeric() (in module biogeme.expressions.numeric_tools) is_panel() (biogeme.database.container.Database method) is_positive() (in module biogeme.check_parameters) is_similar_to() (in module biogeme.dict_of_formulas) is_valid() (biogeme.assisted.AssistedSpecification method) is_valid_filename() (in module biogeme.tools.files) issue_deprecation_warning() (in module biogeme.deprecated) items() (biogeme.expressions.parameter_overrides.ParameterOverrides method)

J

JaxExecutionProfile (class in biogeme.profiling.jax_profile)

K

key() (biogeme.latent_variables.normalization_refs.MeasurementIntercept method) (biogeme.latent_variables.normalization_refs.MeasurementLoading method) (biogeme.latent_variables.normalization_refs.MeasurementSigma method) (biogeme.latent_variables.normalization_refs.ParameterRef method) (biogeme.latent_variables.normalization_refs.StructuralCoefficient method) (biogeme.latent_variables.normalization_refs.StructuralIntercept method) (biogeme.latent_variables.normalization_refs.StructuralSigma method) (biogeme.latent_variables.normalization_refs.ThresholdDelta method) (biogeme.latent_variables.normalization_refs.ThresholdFirst method)

L

label (biogeme.profiling.timing.TimedBlock attribute) large_data_set (biogeme.biogeme.BIOGEME property) largest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) largest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) largest_neighborhood (biogeme.biogeme.BIOGEME property) last_call_time (biogeme.profiling.jax_profile.FunctionProfile attribute) LatentVariable (class in biogeme.latent_variables.model_spec) Less (class in biogeme.expressions.comparison_expressions) LessOrEqual (class in biogeme.expressions.comparison_expressions) likelihood_ratio_init (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_null (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_test() (biogeme.results_processing.estimation_results.EstimationResults method) (in module biogeme.tools.likelihood_ratio) likelihoodregression() (in module biogeme.loglikelihood) LikertIndicator (class in biogeme.latent_variables.model_spec) LikertType (class in biogeme.latent_variables.model_spec) LinearTermTuple (class in biogeme.expressions.linear_utility) LinearUtility (class in biogeme.expressions.linear_utility) list_array_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) list_of_all_betas_in_expression() (in module biogeme.expressions.collectors) list_of_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_draws_in_expression() (in module biogeme.expressions.collectors) list_of_expressions() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_fixed_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) list_of_random_variables_in_expression() (in module biogeme.expressions.collectors) list_of_variables_in_expression() (in module biogeme.expressions.collectors) load() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults class method) log (class in biogeme.expressions.log) LOG_EXP (biogeme.latent_variables.context.PositivityMode attribute) (biogeme.latent_variables.resolved.PositivityStrategy attribute) LOG_EXP_BETA (biogeme.latent_variables.resolved.ParameterCreationKind attribute) log_like (biogeme.biogeme.BIOGEME property) log_like_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) log_ordered_logit() (in module biogeme.models.ordered) log_ordered_logit_from_thresholds() (in module biogeme.models.ordered) log_ordered_probit() (in module biogeme.models.ordered) log_ordered_probit_from_thresholds() (in module biogeme.models.ordered) log_sparse_cnl() (in module biogeme.models.cnl) log_statistics() (biogeme.assisted.ParetoPostProcessing method) logcnl() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) logcnl_avail() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) logcnlmu() (in module biogeme.models.cnl) (in module biogeme.models.cnl_slow) LogCrossNested (class in biogeme.expressions.log_cross_nested)

LogDomainLogCrossNested (class in biogeme.expressions.log_domain_cnl) LOGISTIC (biogeme.latent_variables.resolved.MeasurementErrorDistribution attribute) logisticcdf() (in module biogeme.distributions) logit() (in module biogeme.models.logit) logit_choice_avail() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.log_cross_nested.LogCrossNested method) (biogeme.expressions.log_nested.LogNested method) (biogeme.expressions.log_sampled_cross_nested.LogSampleCrossNested method) (biogeme.expressions.log_sampled_logit.LogSampledLogit method) (biogeme.expressions.log_sampled_nested.LogSampledNested method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.multiple_expressions.MultipleExpression method) LogitTuple (class in biogeme.expressions.base_expressions) loglike (biogeme.biogeme.BIOGEME property) loglikelihood (biogeme.model_elements.model_elements.ModelElements property) loglikelihood() (biogeme.mdcev.mdcev.Mdcev method) (in module biogeme.loglikelihood) loglikelihood_dimension() (in module biogeme.multiobjectives) loglikelihood_name (biogeme.model_elements.model_elements.ModelElements attribute) loglikelihoodregression() (in module biogeme.loglikelihood) LogLogit (class in biogeme.expressions.logit_expressions) loglogit() (in module biogeme.models.logit) logmev() (in module biogeme.models.mev) logmev_endogenous_sampling() (in module biogeme.models.mev) logmev_endogenousSampling() (in module biogeme.models.mev) LogNested (class in biogeme.expressions.log_nested) lognested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) lognested_mev_mu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) lognestedMevMu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) lognormalpdf() (in module biogeme.distributions) LogSampleCrossNested (class in biogeme.expressions.log_sampled_cross_nested) LogSampledLogit (class in biogeme.expressions.log_sampled_logit) LogSampledNested (class in biogeme.expressions.log_sampled_nested) logzero (class in biogeme.expressions.logzero) loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) loo_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) loo_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) LOWER_BOUND (biogeme.latent_variables.context.PositivityMode attribute) (biogeme.latent_variables.resolved.PositivityStrategy attribute) lower_bound_dual_variable() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) LRTuple (class in biogeme.tools.likelihood_ratio)

M

make_diagnostic_evaluator() (in module biogeme.monte_carlo_diagnostic) make_draw_specs() (biogeme.draws.factory.DrawFactory method) make_sampling_config() (in module biogeme.bayesian_estimation.sampling_strategy) max_iterations (biogeme.biogeme.BIOGEME property) max_number_parameters_to_report (biogeme.biogeme.BIOGEME property) maximum_attempts (biogeme.biogeme.BIOGEME property) MAXIMUM_LIKELIHOOD (biogeme.latent_variables.context.EstimationMode attribute) maximum_number_catalog_expressions (biogeme.biogeme.BIOGEME property) maximum_number_parameters (biogeme.biogeme.BIOGEME property) (biogeme.catalog.specification.Specification attribute) mcmc_sampling_strategy (biogeme.biogeme.BIOGEME property) Mdcev (class in biogeme.mdcev.mdcev) mdcev_count() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) mdcev_row_split() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) MdcevConfiguration (class in biogeme.mdcev.mdcev) MEAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) mean_repeated_time (biogeme.profiling.benchmark.BenchmarkCaseResult property) mean_time (biogeme.profiling.jax_profile.FunctionProfile property) MEASUREMENT_INTERCEPT (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_intercept_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) MEASUREMENT_LOADING (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_loading_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) measurement_prefix() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) MEASUREMENT_SIGMA (biogeme.latent_variables.resolved.ParameterRole attribute) measurement_sigma_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) MeasurementConfiguration (class in biogeme.latent_variables.model_spec) MeasurementErrorDistribution (class in biogeme.latent_variables.resolved) MeasurementIntercept (class in biogeme.latent_variables.normalization_refs) MeasurementLoading (class in biogeme.latent_variables.normalization_refs) MeasurementModel (class in biogeme.latent_variables.model_spec) MeasurementSigma (class in biogeme.latent_variables.normalization_refs) MEDIAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) merge_audit_tuples() (in module biogeme.audit_tuple) mev() (in module biogeme.models.mev) mev_endogenous_sampling() (in module biogeme.models.mev) mev_endogenousSampling() (in module biogeme.models.mev) mev_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_prefix (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) mev_sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) Minus (class in biogeme.expressions.minus) missing_data (biogeme.biogeme.BIOGEME property) mixedloglikelihood() (in module biogeme.loglikelihood) MLHS_anti() (in module biogeme.draws.native_draws) MODE (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) model_elements (biogeme.biogeme.BIOGEME property) model_estimation() (in module biogeme.likelihood.model_estimation) model_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) model_names (biogeme.catalog.specification.Specification attribute) ModelElements (class in biogeme.model_elements.model_elements) ModelElementsAdapter (class in biogeme.model_elements.database_adapter) modelName (biogeme.biogeme.BIOGEME property) ModelNames (class in biogeme.tools.unique_ids) modify_controller() (biogeme.catalog.controller.Controller method) modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) module biogeme.assisted biogeme.audit_tuple biogeme.bayesian_estimation.bayesian_results biogeme.bayesian_estimation.bayesian_results_summary biogeme.bayesian_estimation.check_shape biogeme.bayesian_estimation.html_output biogeme.bayesian_estimation.pandas_output biogeme.bayesian_estimation.raw_bayesian_results biogeme.bayesian_estimation.sampling biogeme.bayesian_estimation.sampling_strategy biogeme.biogeme biogeme.biogeme_logging biogeme.catalog.catalog biogeme.catalog.catalog_iterator biogeme.catalog.central_controller biogeme.catalog.configuration biogeme.catalog.controller biogeme.catalog.generic_alt_specific_catalog biogeme.catalog.segmentation_catalog biogeme.catalog.specification biogeme.check_parameters biogeme.cnl biogeme.constants biogeme.data.mdcev_data biogeme.data.optima biogeme.data.swissmetro biogeme.database.audit biogeme.database.container biogeme.database.mdcev biogeme.database.panel biogeme.database.panel_map biogeme.database.sampling biogeme.default_parameters biogeme.deprecated biogeme.dict_of_formulas biogeme.distributions biogeme.draws.factory biogeme.draws.generators biogeme.draws.management biogeme.draws.native_draws biogeme.draws.pymc_draws biogeme.exceptions biogeme.expressions.add_prefix_suffix biogeme.expressions.audit biogeme.expressions.base_expressions biogeme.expressions.bayesian biogeme.expressions.belongs_to biogeme.expressions.beta_parameters biogeme.expressions.binary_expressions biogeme.expressions.binary_max biogeme.expressions.binary_min biogeme.expressions.boxcox biogeme.expressions.collectors biogeme.expressions.comparison_expressions biogeme.expressions.conditional_sum biogeme.expressions.convert biogeme.expressions.cos biogeme.expressions.deprecated biogeme.expressions.derive biogeme.expressions.distributed_parameter biogeme.expressions.divide biogeme.expressions.draws biogeme.expressions.elem biogeme.expressions.elementary_expressions biogeme.expressions.elementary_types biogeme.expressions.exp biogeme.expressions.expm1 biogeme.expressions.individual_draws biogeme.expressions.integrate biogeme.expressions.jax_utils biogeme.expressions.linear_utility biogeme.expressions.log biogeme.expressions.log_cross_nested biogeme.expressions.log_domain_cnl biogeme.expressions.log_nested biogeme.expressions.log_sampled_cross_nested biogeme.expressions.log_sampled_logit biogeme.expressions.log_sampled_nested biogeme.expressions.logical_and biogeme.expressions.logical_or biogeme.expressions.logit_expressions biogeme.expressions.logzero biogeme.expressions.minus biogeme.expressions.montecarlo biogeme.expressions.multiple_expressions biogeme.expressions.multiple_product biogeme.expressions.multiple_sum biogeme.expressions.named_expression biogeme.expressions.normalcdf biogeme.expressions.numeric_expressions biogeme.expressions.numeric_tools biogeme.expressions.ordered biogeme.expressions.panel_likelihood_trajectory biogeme.expressions.panel_log_likelihood biogeme.expressions.parameter_overrides biogeme.expressions.plus biogeme.expressions.power biogeme.expressions.power_constant biogeme.expressions.prepare_for_panel biogeme.expressions.random_variable biogeme.expressions.rename_variables biogeme.expressions.set_panel_id biogeme.expressions.sin biogeme.expressions.sparse_log_cross_nested biogeme.expressions.times biogeme.expressions.unary_expressions biogeme.expressions.unary_minus biogeme.expressions.validation biogeme.expressions.variable biogeme.expressions.visitor biogeme.expressions.weighted_logsum_exp biogeme.expressions_registry biogeme.filenames biogeme.floating_point biogeme.function_output biogeme.jax_calculator.function_call biogeme.jax_calculator.multiple_formula biogeme.jax_calculator.simple_formula biogeme.jax_calculator.single_formula biogeme.latent_variables.biogeme_builder biogeme.latent_variables.context biogeme.latent_variables.html_report biogeme.latent_variables.io biogeme.latent_variables.latex_report biogeme.latent_variables.model_spec biogeme.latent_variables.naming biogeme.latent_variables.normalization_plan biogeme.latent_variables.normalization_refs biogeme.latent_variables.python_generator biogeme.latent_variables.resolved biogeme.latent_variables.resolver biogeme.latent_variables.tex_utils biogeme.latent_variables.validation biogeme.likelihood.bootstrap biogeme.likelihood.linear_regression biogeme.likelihood.model_estimation biogeme.likelihood.negative_likelihood biogeme.loglikelihood biogeme.lsh biogeme.mdcev.database_utils biogeme.mdcev.gamma_profile biogeme.mdcev.generalized biogeme.mdcev.mdcev biogeme.mdcev.non_monotonic biogeme.mdcev.translated biogeme.model_elements.audit biogeme.model_elements.database_adapter biogeme.model_elements.model_elements biogeme.models.boxcox biogeme.models.cnl biogeme.models.cnl_slow biogeme.models.logit biogeme.models.mev biogeme.models.nested biogeme.models.nested_slow biogeme.models.ordered biogeme.models.piecewise biogeme.monte_carlo_diagnostic biogeme.multiobjectives biogeme.nests biogeme.optimization biogeme.parameters biogeme.partition biogeme.profiling.benchmark biogeme.profiling.environment biogeme.profiling.jax_profile biogeme.profiling.timing biogeme.pymc_calculator biogeme.results biogeme.results_processing.compilation biogeme.results_processing.estimation_results biogeme.results_processing.f12_output biogeme.results_processing.html_output biogeme.results_processing.latex_output biogeme.results_processing.pandas_output biogeme.results_processing.pareto biogeme.results_processing.raw_estimation_results biogeme.results_processing.recycle_pickle biogeme.results_processing.variance_covariance biogeme.sampling_of_alternatives.choice_set_generation biogeme.sampling_of_alternatives.generate_model biogeme.sampling_of_alternatives.generate_model_slow biogeme.sampling_of_alternatives.sampling_context biogeme.sampling_of_alternatives.sampling_of_alternatives biogeme.second_derivatives biogeme.segmentation.database biogeme.segmentation.one_segmentation biogeme.segmentation.segmentation biogeme.segmentation.segmentation_context biogeme.segmentation.segmented_beta biogeme.tools.checks biogeme.tools.database biogeme.tools.derivatives biogeme.tools.ellipse biogeme.tools.files biogeme.tools.formatting biogeme.tools.jax_multicore biogeme.tools.likelihood_ratio biogeme.tools.pandas_to_latex biogeme.tools.primes biogeme.tools.pymc_utils biogeme.tools.serialize_numpy biogeme.tools.simulate biogeme.tools.time biogeme.tools.timeit_context_manager biogeme.tools.timeit_decorator biogeme.tools.unique_ids biogeme.tools.yaml biogeme.validation.cross_validation biogeme.validation.prepare_validation biogeme.validation.split_databases biogeme.validity biogeme.version

MONOTONE (biogeme.latent_variables.resolved.ThresholdConstructionKind attribute) monte_carlo (biogeme.results_processing.estimation_results.EstimationResults property) monte_carlo_diagnostic_auto (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_draw_factors (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_gradient_tolerance (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_max_draws (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_minimum_level_factor (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_objective_tolerance (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_replications (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_safety_factor (biogeme.biogeme.BIOGEME property) monte_carlo_diagnostic_time_budget (biogeme.biogeme.BIOGEME property) MonteCarlo (class in biogeme.expressions.montecarlo) MonteCarloDiagnosticConfiguration (class in biogeme.monte_carlo_diagnostic) MonteCarloDiagnosticResult (class in biogeme.monte_carlo_diagnostic) MonteCarloDiagnosticRunner (class in biogeme.monte_carlo_diagnostic) MultipleExpression (class in biogeme.expressions.multiple_expressions) MultipleProduct (class in biogeme.expressions.multiple_product) MultipleSum (class in biogeme.expressions.multiple_sum) MultiRowEvaluator (class in biogeme.jax_calculator.multiple_formula)

N

name (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) named_function_output() (in module biogeme.expressions.named_expression) NamedCallableExpression (class in biogeme.jax_calculator.function_call) NamedExpression (class in biogeme.expressions.multiple_expressions) NamedFunctionOutput (class in biogeme.function_output) NamedFunctionResult (class in biogeme.function_output) NamedOutputMixin (class in biogeme.function_output) NameSectionTuple (class in biogeme.parameters) NamingPolicy (class in biogeme.latent_variables.naming) NegativeLikelihood (class in biogeme.likelihood.negative_likelihood) nested() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) nested_mev_mu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) nestedMevMu() (in module biogeme.models.nested) (in module biogeme.models.nested_slow) Nests (class in biogeme.nests) NestsForCrossNestedLogit (class in biogeme.nests) NestsForNestedLogit (class in biogeme.nests) NEVER (biogeme.second_derivatives.SecondDerivativesMode attribute) newton_linesearch_for_biogeme() (in module biogeme.optimization) newton_trust_region_for_biogeme() (in module biogeme.optimization) NONE (biogeme.latent_variables.resolved.PositivityStrategy attribute) NonMonotonic (class in biogeme.mdcev.non_monotonic) normal_antithetic() (in module biogeme.draws.native_draws) normal_halton2() (in module biogeme.draws.native_draws) normal_halton3() (in module biogeme.draws.native_draws) normal_halton5() (in module biogeme.draws.native_draws) normal_logpdf() (in module biogeme.distributions) normal_MLHS() (in module biogeme.draws.native_draws)

normal_MLHS_anti() (in module biogeme.draws.native_draws) NormalCdf (class in biogeme.expressions.normalcdf) NormalizationPlan (class in biogeme.latent_variables.normalization_plan) normalize_draw_count() (in module biogeme.monte_carlo_diagnostic) normalpdf() (in module biogeme.distributions) NotEqual (class in biogeme.expressions.comparison_expressions) NotImplementedError num_columns() (biogeme.database.container.Database method) num_rows() (biogeme.database.container.Database method) num_runs (biogeme.tools.time.Timing property) number_of_alternatives (biogeme.mdcev.mdcev.Mdcev property) number_of_configurations() (biogeme.catalog.central_controller.CentralController method) number_of_draws (biogeme.biogeme.BIOGEME property) number_of_free_betas (biogeme.expressions_registry.ExpressionRegistry property) number_of_free_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_jobs (biogeme.biogeme.BIOGEME property) number_of_neighbors (biogeme.biogeme.BIOGEME property) number_of_observations (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property) (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) number_of_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_random_variables (biogeme.expressions_registry.ExpressionRegistry property) number_of_segments() (biogeme.partition.Partition method) number_of_threads (biogeme.biogeme.BIOGEME property) number_unknown_parameters() (biogeme.biogeme.BIOGEME method) Numeric (class in biogeme.expressions.numeric_expressions) NUMERIC_CONSTANT (biogeme.latent_variables.resolved.ParameterCreationKind attribute) numerically_safe (biogeme.biogeme.BIOGEME property)

O

OBS (biogeme.expressions.bayesian.Dimension attribute) observation_suffix() (in module biogeme.database.panel) OldNewName (class in biogeme.expressions.rename_variables) on_database_update() (biogeme.model_elements.model_elements.ModelElements method) OneNestForCrossNestedLogit (class in biogeme.nests) OneNestForNestedLogit (class in biogeme.nests) OneSegmentation (class in biogeme.segmentation.one_segmentation) only_robust_stats (biogeme.biogeme.BIOGEME property) optimal_consumption() (biogeme.mdcev.mdcev.Mdcev method) optimal_consumption_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) optimization() (in module biogeme.likelihood.model_estimation) optimization_algorithm (biogeme.biogeme.BIOGEME property) optimization_complete (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

optimization_parameters (biogeme.biogeme.BIOGEME property) Or (class in biogeme.expressions.logical_or) ORDERED_LOGIT (biogeme.latent_variables.model_spec.MeasurementModel attribute) ordered_logit() (in module biogeme.models.ordered) ordered_logit_from_thresholds() (in module biogeme.models.ordered) ORDERED_PROBIT (biogeme.latent_variables.model_spec.MeasurementModel attribute) ordered_probit() (in module biogeme.models.ordered) ordered_probit_from_thresholds() (in module biogeme.models.ordered) OrderedBase (class in biogeme.expressions.ordered) OrderedLogit (class in biogeme.expressions.ordered) OrderedLogLogit (class in biogeme.expressions.ordered) OrderedLogProbit (class in biogeme.expressions.ordered) OrderedProbit (class in biogeme.expressions.ordered) other_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) outside_good_index (biogeme.mdcev.mdcev.Mdcev property) OVERWRITE (biogeme.latent_variables.normalization_plan.ConflictPolicy attribute)

P

p_loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) p_waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) panel() (biogeme.database.container.Database method) panel_column_handler() (in module biogeme.expressions.prepare_for_panel) panel_id_handler() (in module biogeme.expressions.set_panel_id) PanelColumnSetting (class in biogeme.expressions.prepare_for_panel) PanelDatabase (class in biogeme.database.panel) PanelLikelihoodTrajectory (class in biogeme.expressions.panel_likelihood_trajectory) PanelLogLikelihood (class in biogeme.expressions.panel_log_likelihood) parameter_estimates() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) parameter_exists() (biogeme.parameters.Parameters method) parameter_names (biogeme.parameters.Parameters property) ParameterCreationKind (class in biogeme.latent_variables.resolved) ParameterOverrides (class in biogeme.expressions.parameter_overrides) ParameterRef (class in biogeme.latent_variables.normalization_refs) ParameterRole (class in biogeme.latent_variables.resolved) Parameters (class in biogeme.parameters) parameters_in_section() (biogeme.parameters.Parameters method) ParameterStatus (class in biogeme.latent_variables.resolved) ParameterTuple (class in biogeme.default_parameters) pareto (biogeme.catalog.specification.Specification attribute) pareto_optimal() (in module biogeme.results_processing.pareto) ParetoPostProcessing (class in biogeme.assisted) parse_boolean() (in module biogeme.parameters) Partition (class in biogeme.partition) pickle_to_yaml() (in module biogeme.results_processing.recycle_pickle) piecewise_as_variable() (in module biogeme.models.piecewise)

piecewise_formula() (in module biogeme.models.piecewise) piecewise_function() (in module biogeme.models.piecewise) piecewise_variables() (in module biogeme.models.piecewise) plot() (biogeme.assisted.ParetoPostProcessing method) Plus (class in biogeme.expressions.plus) PositiveParameterSpec (class in biogeme.latent_variables.model_spec) PositivityMode (class in biogeme.latent_variables.context) PositivityStrategy (class in biogeme.latent_variables.resolved) posterior_draws (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary property) posterior_mean_by_observation() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) posterior_predictive_loglike (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) PosteriorSummary (class in biogeme.bayesian_estimation.bayesian_results) Power (class in biogeme.expressions.power) PowerConstant (class in biogeme.expressions.power_constant) prefix_suffix_variable_name_handler() (in module biogeme.expressions.add_prefix_suffix) prepare() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) prepare_for_panel() (in module biogeme.expressions.prepare_for_panel) prepare_operators() (biogeme.catalog.central_controller.CentralController method) pretty_model() (in module biogeme.tools.pymc_utils) print_file_size() (in module biogeme.tools.files) print_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) print_list_of_parameters() (in module biogeme.default_parameters) PriorFactory (class in biogeme.expressions.beta_parameters) process_row() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) pymc_formula_evaluator() (in module biogeme.pymc_calculator) PymcModelBuilderType (class in biogeme.expressions.bayesian)

Q

quick_estimate() (biogeme.biogeme.BIOGEME method)

R

raise_for_errors() (biogeme.latent_variables.validation.ValidationResult method) RANDOM_VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) random_variables (biogeme.expressions_registry.ExpressionRegistry property) random_variables_indices (biogeme.expressions_registry.ExpressionRegistry property) RandomNumberGeneratorTuple (class in biogeme.draws.native_draws) RandomVariable (class in biogeme.expressions.random_variable) RAO_CRAMER (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) rao_cramer_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) RawBayesianResults (class in biogeme.bayesian_estimation.raw_bayesian_results) RawEstimationResults (class in biogeme.results_processing.raw_estimation_results) RawResults (class in biogeme.results_processing.recycle_pickle) read_data() (in module biogeme.data.mdcev_data) (in module biogeme.data.optima) (in module biogeme.data.swissmetro) read_file() (biogeme.parameters.Parameters method) read_pickle_biogeme() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_10() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_11() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_12() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_13() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_14() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_7() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_8() (in module biogeme.results_processing.recycle_pickle) recommendation (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticResult property) record_build() (biogeme.profiling.jax_profile.JaxExecutionProfile method) recursive_construct_jax_function() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.log_cross_nested.LogCrossNested method) (biogeme.expressions.log_domain_cnl.LogDomainLogCrossNested method) (biogeme.expressions.log_nested.LogNested method) (biogeme.expressions.log_sampled_cross_nested.LogSampleCrossNested method) (biogeme.expressions.log_sampled_logit.LogSampledLogit method) (biogeme.expressions.log_sampled_nested.LogSampledNested method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.sparse_log_cross_nested.SparseLogCrossNested method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp method) recursive_construct_jax_function_beta() (biogeme.expressions.derive.Derive method) recursive_construct_jax_function_variable() (biogeme.expressions.derive.Derive method) recursive_construct_pymc_model_builder() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.log_cross_nested.LogCrossNested method) (biogeme.expressions.log_nested.LogNested method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp method)

recursive_construct_pymc_model_builder_old() (biogeme.expressions.logit_expressions.LogLogit method) reestimate() (biogeme.assisted.ParetoPostProcessing method) register() (biogeme.expressions.collectors.ExpressionCollector method) (biogeme.expressions.visitor.ExpressionVisitor method) register_listener() (biogeme.database.container.Database method) regression_likelihood() (in module biogeme.likelihood.linear_regression) regression_loglikelihood() (in module biogeme.likelihood.linear_regression) RegularAdapter (class in biogeme.model_elements.database_adapter) remove() (biogeme.database.container.Database method) (biogeme.tools.files.TemporaryFile method) remove_column() (biogeme.database.container.Database method) remove_rows() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method) rename_all_variables() (in module biogeme.expressions.rename_variables) rename_and_renumber() (in module biogeme.results_processing.latex_output) rename_elementary() (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) rename_variable_handler() (in module biogeme.expressions.rename_variables) report_array() (biogeme.biogeme.BIOGEME method) report_jax_cpu_devices() (in module biogeme.tools.jax_multicore) report_jax_environment() (in module biogeme.profiling.environment) report_stored_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) reporting() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) request_stop() (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticRunner method) requires_draws (biogeme.expressions_registry.ExpressionRegistry property) requires_draws() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) reset_indices() (biogeme.database.container.Database method) reset_selection() (biogeme.catalog.central_controller.CentralController method) (biogeme.catalog.controller.Controller method) resolve_model() (in module biogeme.latent_variables.resolver) ResolvedConstant (class in biogeme.latent_variables.resolved) ResolvedCutpoint (class in biogeme.latent_variables.resolved) ResolvedIndicatorType (class in biogeme.latent_variables.resolved) ResolvedLatentVariable (class in biogeme.latent_variables.resolved) ResolvedLinearCombination (class in biogeme.latent_variables.resolved) ResolvedLinearTerm (class in biogeme.latent_variables.resolved) ResolvedMeasurementEquation (class in biogeme.latent_variables.resolved) ResolvedModel (class in biogeme.latent_variables.resolved) ResolvedModelMetadata (class in biogeme.latent_variables.resolved) ResolvedNormalizationRule (class in biogeme.latent_variables.resolved) ResolvedNormalizationSummary (class in biogeme.latent_variables.resolved) ResolvedParameter (class in biogeme.latent_variables.resolved) ResolvedParameterRef (class in biogeme.latent_variables.resolved) ResolvedStructuralEquation (class in biogeme.latent_variables.resolved) ResolvedThresholdSystem (class in biogeme.latent_variables.resolved) retrieve_saved_estimates() (biogeme.biogeme.BIOGEME method) rho_bar_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_bar_square_null (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_null (biogeme.results_processing.estimation_results.EstimationResults property) ROBUST (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) robust_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) rows_slice() (biogeme.database.panel_map.ContiguousPanelMap method) run() (biogeme.assisted.AssistedSpecification method) (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticRunner method) run_benchmark() (in module biogeme.profiling.benchmark) run_monte_carlo_diagnostic() (in module biogeme.monte_carlo_diagnostic) run_sampling() (in module biogeme.bayesian_estimation.sampling) run_time (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property)

S

safe_beta_id (biogeme.expressions.beta_parameters.Beta property) safe_deserialize_array() (in module biogeme.tools.serialize_numpy) safe_draw_id (biogeme.expressions.draws.Draws property) safe_rv_id (biogeme.expressions.integrate.IntegrateNormal property) (biogeme.expressions.random_variable.RandomVariable property) safe_serialize_array() (in module biogeme.tools.serialize_numpy) safe_variable_id (biogeme.expressions.variable.Variable property) sample_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_and_merge() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) sample_from_prior (biogeme.biogeme.BIOGEME property) sample_mev_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_panel_with_replacement() (in module biogeme.database.sampling) sample_size (biogeme.biogeme.BIOGEME property) (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) sample_with_replacement() (in module biogeme.database.sampling) sampler (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) SamplingConfig (class in biogeme.bayesian_estimation.sampling_strategy) SamplingContext (class in biogeme.sampling_of_alternatives.sampling_context) SamplingOfAlternatives (class in biogeme.sampling_of_alternatives.sampling_of_alternatives) save() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method) save_html_report() (in module biogeme.latent_variables.html_report) save_iterations (biogeme.biogeme.BIOGEME property) save_iterations() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) save_latex_report() (in module biogeme.latent_variables.latex_report) save_python_code() (in module biogeme.latent_variables.python_generator) save_text() (in module biogeme.latent_variables.io) save_validation_results (biogeme.biogeme.BIOGEME property) scale_column() (biogeme.database.container.Database method) scipy() (in module biogeme.optimization) second_derivatives (biogeme.biogeme.BIOGEME property) SecondDerivativesMode (class in biogeme.second_derivatives) sections (biogeme.parameters.Parameters property) sections_from_name() (biogeme.parameters.Parameters method) seed (biogeme.biogeme.BIOGEME property) Segmentation (class in biogeme.segmentation.segmentation) segmentation_catalogs() (in module biogeme.catalog.segmentation_catalog) segmented_beta() (biogeme.segmentation.segmentation.Segmentation method) (in module biogeme.segmentation.segmented_beta) segmented_code() (biogeme.segmentation.segmentation.Segmentation method) SegmentedParameters (class in biogeme.catalog.segmentation_catalog) selected() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_expression() (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_name() (biogeme.expressions.multiple_expressions.MultipleExpression method) SelectedConfigurationsIterator (class in biogeme.catalog.catalog_iterator) selections (biogeme.catalog.configuration.Configuration property) SelectionTuple (class in biogeme.catalog.configuration) serialize_to_yaml() (in module biogeme.results_processing.raw_estimation_results) set() (biogeme.expressions.parameter_overrides.ParameterOverrides method) set_configuration() (biogeme.catalog.central_controller.CentralController method) set_configuration_from_id() (biogeme.catalog.central_controller.CentralController method) set_controller() (biogeme.catalog.central_controller.CentralController method) set_diagnostic_figure_references() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) set_draw_dimension_for_all_draws() (in module biogeme.expressions.prepare_for_panel) set_draw_dimension_handler() (in module biogeme.expressions.prepare_for_panel) set_draw_per_individual() (biogeme.expressions.draws.Draws method) set_draw_per_observation() (biogeme.expressions.draws.Draws method) set_index() (biogeme.catalog.controller.Controller method) set_maximum_number_of_observations_per_individual() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method)

set_name() (biogeme.catalog.controller.Controller method) set_of_controllers() (biogeme.catalog.configuration.Configuration method) set_panel_column_on_distributed_parameters() (in module biogeme.expressions.prepare_for_panel) set_panel_id() (in module biogeme.expressions.set_panel_id) set_random_init_values() (biogeme.biogeme.BIOGEME method) set_several_parameters() (biogeme.parameters.Parameters method) set_specific_id() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.multiple_expressions.MultipleExpression method) set_value() (biogeme.parameters.Parameters method) short_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.results_processing.estimation_results.EstimationResults method) simple_bounds_newton_algorithm_for_biogeme() (in module biogeme.optimization) simulate() (biogeme.biogeme.BIOGEME method) (in module biogeme.tools.simulate) simulate_bayesian() (biogeme.biogeme.BIOGEME method) sin (class in biogeme.expressions.sin) smallest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) smallest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) sorting_utility_one_alternative() (biogeme.mdcev.generalized.Generalized method) sparse_cnl() (in module biogeme.models.cnl) SparseLogCrossNested (class in biogeme.expressions.sparse_log_cross_nested) Specification (class in biogeme.catalog.specification) split() (in module biogeme.validation.prepare_validation) split_databases() (in module biogeme.validation.split_databases) split_validation_sets() (in module biogeme.database.sampling) start_time (biogeme.profiling.timing.TimedBlock attribute) steptol (biogeme.biogeme.BIOGEME property) stored_variables_report (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) StratumTuple (class in biogeme.sampling_of_alternatives.sampling_context) structural_beta_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) STRUCTURAL_COEFFICIENT (biogeme.latent_variables.resolved.ParameterRole attribute) structural_draw_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) STRUCTURAL_INTERCEPT (biogeme.latent_variables.resolved.ParameterRole attribute) structural_intercept_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) structural_prefix() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) STRUCTURAL_SIGMA (biogeme.latent_variables.resolved.ParameterRole attribute) structural_sigma_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) StructuralCoefficient (class in biogeme.latent_variables.normalization_refs) StructuralEquation (class in biogeme.latent_variables.model_spec) StructuralIntercept (class in biogeme.latent_variables.normalization_refs) StructuralSigma (class in biogeme.latent_variables.normalization_refs) suggest_scaling() (biogeme.database.container.Database method) sum_of_utilities() (biogeme.mdcev.mdcev.Mdcev method) summarize_array_variable() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) summary() (biogeme.profiling.benchmark.BenchmarkSeriesResult method) (biogeme.profiling.jax_profile.JaxExecutionProfile method) suppress_logs() (in module biogeme.biogeme_logging) symm_halton2() (in module biogeme.draws.native_draws) symm_halton3() (in module biogeme.draws.native_draws) symm_halton5() (in module biogeme.draws.native_draws) symm_MLHS() (in module biogeme.draws.native_draws) symm_MLHS_anti() (in module biogeme.draws.native_draws) symm_uniform() (in module biogeme.draws.native_draws) symm_uniform_antithetic() (in module biogeme.draws.native_draws) SYMMETRIC (biogeme.latent_variables.resolved.ThresholdConstructionKind attribute)

T

target_accept (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property) task_identity() (in module biogeme.monte_carlo_diagnostic) TemporaryFile (class in biogeme.tools.files) terms (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp property) tex_escape() (in module biogeme.latent_variables.tex_utils) tex_identifier() (in module biogeme.latent_variables.tex_utils) THRESHOLD_DELTA (biogeme.latent_variables.resolved.ParameterRole attribute) threshold_delta_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) THRESHOLD_FIRST (biogeme.latent_variables.resolved.ParameterRole attribute) threshold_tau1_name() (biogeme.latent_variables.naming.DefaultNamingPolicy method) (biogeme.latent_variables.naming.NamingPolicy method) ThresholdConstructionKind (class in biogeme.latent_variables.resolved) ThresholdDelta (class in biogeme.latent_variables.normalization_refs) ThresholdFirst (class in biogeme.latent_variables.normalization_refs) time_function() (biogeme.tools.time.Timing method) timed_call() (biogeme.profiling.jax_profile.JaxExecutionProfile method) (in module biogeme.profiling.timing) TimedBlock (class in biogeme.profiling.timing) timedelta_constructor() (in module biogeme.tools.yaml)

timedelta_representer() (in module biogeme.tools.yaml) timeit() (in module biogeme.tools.timeit_context_manager) timeit_old() (in module biogeme.tools.timeit_decorator) Times (class in biogeme.expressions.times) Timing (class in biogeme.tools.time) to_dict() (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary method) (biogeme.bayesian_estimation.bayesian_results_summary.EstimatedBetaSummary method) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method) (biogeme.profiling.jax_profile.JaxExecutionProfile method) to_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) tolerance (biogeme.biogeme.BIOGEME property) total_mev_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) total_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) total_time (biogeme.profiling.jax_profile.FunctionProfile attribute) transformed_utility() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Translated (class in biogeme.mdcev.translated) triangularpdf() (in module biogeme.distributions) two_controllers() (biogeme.catalog.central_controller.CentralController method) TypeOfElementaryExpression (class in biogeme.expressions.elementary_types)

U

UnaryMinus (class in biogeme.expressions.unary_minus) UnaryOperator (class in biogeme.expressions.unary_expressions) uniform_antithetic() (in module biogeme.draws.native_draws) uniformpdf() (in module biogeme.distributions) unique_entry() (biogeme.function_output.DisaggregateFunctionOutput method) unique_product() (in module biogeme.tools.unique_ids) use_flatten_database (biogeme.biogeme.BIOGEME property) use_jit (biogeme.biogeme.BIOGEME property) user_defined_validity_check (biogeme.catalog.specification.Specification attribute) user_notes (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) uses_sparse_memberships (biogeme.expressions.log_cross_nested.LogCrossNested attribute) (biogeme.expressions.sparse_log_cross_nested.SparseLogCrossNested attribute)

utc_now() (in module biogeme.monte_carlo_diagnostic) utility_expression_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method)

V

validate() (biogeme.biogeme.BIOGEME method) (biogeme.monte_carlo_diagnostic.MonteCarloDiagnosticConfiguration method) validate_and_convert() (in module biogeme.expressions.convert) validate_dict_types() (in module biogeme.tools.checks) validate_expression_type() (in module biogeme.expressions.validation) validate_forecast() (biogeme.mdcev.mdcev.Mdcev method) validate_normalization_plan() (in module biogeme.latent_variables.validation) validate_partition() (biogeme.partition.Partition method) validate_segments() (biogeme.partition.Partition method) validate_specification() (in module biogeme.latent_variables.validation) validation() (biogeme.mdcev.mdcev.Mdcev method) validation_one_alternative() (biogeme.mdcev.mdcev.Mdcev method) validation_one_alternative_one_consumption() (biogeme.mdcev.mdcev.Mdcev method)

ValidationLevel (class in biogeme.latent_variables.validation) ValidationResult (class in biogeme.latent_variables.validation) (class in biogeme.validation.cross_validation) Validity (class in biogeme.validity) ValueOutOfRange VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) Variable (class in biogeme.expressions.variable) variables (biogeme.expressions_registry.ExpressionRegistry property) variables_indices (biogeme.expressions_registry.ExpressionRegistry property) variance_covariance_missing (biogeme.results_processing.estimation_results.EstimationResults property) verify_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) version (biogeme.biogeme.BIOGEME property) visit() (biogeme.expressions.visitor.ExpressionVisitor method)

W

waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) waic_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) waic_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.bayesian_results_summary.BayesianResultsSummary attribute) walk() (biogeme.expressions.collectors.ExpressionCollector method) warm_up_runs (biogeme.tools.time.Timing property) warmup (biogeme.biogeme.BIOGEME property) WARNING (biogeme.latent_variables.validation.ValidationLevel attribute)

warning_cpu_devices() (in module biogeme.tools.jax_multicore) weight (biogeme.biogeme.BIOGEME property) (biogeme.model_elements.model_elements.ModelElements property) weight_name (biogeme.model_elements.model_elements.ModelElements attribute) weighted_logsumexp() (in module biogeme.expressions.weighted_logsum_exp) WeightedLogSumExp (class in biogeme.expressions.weighted_logsum_exp) weights (biogeme.expressions.weighted_logsum_exp.WeightedLogSumExp property) write_f12() (biogeme.results_processing.estimation_results.EstimationResults method) write_latex() (biogeme.results_processing.estimation_results.EstimationResults method)

Z

zero_one() (in module biogeme.check_parameters)