Index

A

add_alphas() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) add_column() (biogeme.database.container.Database method) add_latent_variable() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) add_parameter() (biogeme.parameters.Parameters method) add_prefix_suffix_to_all_variables() (in module biogeme.expressions.add_prefix_suffix) add_suffix_to_all_variables() (biogeme.expressions.multiple_expressions.MultipleExpression method) add_trailing_zero() (in module biogeme.results_processing.latex_output) AIC_BIC_dimension() (in module biogeme.multiobjectives) aic_bic_dimension() (in module biogeme.multiobjectives) akaike_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) algo_parameters (biogeme.biogeme.BIOGEME property), [1] algorithm_has_converged (biogeme.results_processing.estimation_results.EstimationResults property) AlgorithmResults (class in biogeme.likelihood.model_estimation) all_alpha_fixed() (biogeme.nests.OneNestForCrossNestedLogit method) all_alphas_fixed() (biogeme.nests.NestsForCrossNestedLogit method) all_configurations() (biogeme.catalog.controller.Controller method) all_parameters_tuple() (in module biogeme.default_parameters) all_results (biogeme.catalog.specification.Specification attribute) ALT (biogeme.expressions.bayesian.Dimension attribute) alternatives (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ANALYTICAL (biogeme.second_derivatives.SecondDerivativesMode attribute) analytical_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) analytical_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) And (class in biogeme.expressions.logical_and) are_derivatives_available (biogeme.results_processing.estimation_results.EstimationResults property)

array_metadata (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) arviz_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) assert_sets_equal() (in module biogeme.tools.checks) AssistedSpecification (class in biogeme.assisted) attributes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) audit() (biogeme.model_elements.model_elements.ModelElements method) audit_belongsto() (in module biogeme.expressions.audit) audit_chosen_alternative() (in module biogeme.model_elements.audit) audit_dataframe() (in module biogeme.database.audit) audit_default() (in module biogeme.expressions.audit) audit_draws() (in module biogeme.expressions.audit) audit_expression() (in module biogeme.expressions.audit) audit_integrate() (in module biogeme.expressions.audit) audit_loglogit() (in module biogeme.expressions.audit) audit_montecarlo() (in module biogeme.expressions.audit) audit_panel() (in module biogeme.model_elements.audit) audit_panel_dataframe() (in module biogeme.database.audit) audit_randomvariable() (in module biogeme.expressions.audit) audit_variables() (in module biogeme.model_elements.audit) AuditTuple (class in biogeme.audit_tuple) av (biogeme.expressions.logit_expressions.LogLogit attribute) availabilities (biogeme.expressions.base_expressions.LogitTuple attribute) available (biogeme.database.audit.ChosenAvailable attribute) axis_one (biogeme.tools.ellipse.Ellipse attribute) axis_two (biogeme.tools.ellipse.Ellipse attribute)

B

backend (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) BAYESIAN (biogeme.latent_variables.ordered_mimic.EstimationMode attribute) bayesian_cross_validate_model() (in module biogeme.validation.cross_validation) BAYESIAN_DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) bayesian_estimation() (biogeme.biogeme.BIOGEME method), [1] bayesian_estimation_non_panel() (biogeme.biogeme.BIOGEME method), [1] bayesian_estimation_panel() (biogeme.biogeme.BIOGEME method), [1] bayesian_information_criterion (biogeme.results_processing.estimation_results.EstimationResults property) BayesianResults (class in biogeme.bayesian_estimation.bayesian_results) BelongsTo (class in biogeme.expressions.belongs_to) best_draw_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) best_iteration (biogeme.biogeme.BIOGEME attribute), [1] BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) beta (biogeme.expressions.linear_utility.LinearTermTuple attribute) Beta (class in biogeme.expressions.beta_parameters) (class in biogeme.results_processing.recycle_pickle) beta_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_expression() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_name() (biogeme.segmentation.one_segmentation.OneSegmentation method) beta_names (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) beta_ref_code() (biogeme.segmentation.segmentation.Segmentation method) beta_values (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) betas (biogeme.expressions.linear_utility.LinearUtility attribute) bfgs_linesearch_for_biogeme() (in module biogeme.optimization) bfgs_trust_region_for_biogeme() (in module biogeme.optimization) bhhh (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BHHH (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bhhh_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bhhhs (biogeme.function_output.DisaggregateFunctionOutput attribute) BinaryMax (class in biogeme.expressions.binary_max) BinaryMin (class in biogeme.expressions.binary_min) BinaryOperator (class in biogeme.expressions.binary_expressions) bio_bfgs() (in module biogeme.optimization) bio_newton() (in module biogeme.optimization) bioDraws() (in module biogeme.expressions.deprecated) BIOGEME (class in biogeme.biogeme), [1] biogeme.assisted module biogeme.audit_tuple module biogeme.bayesian_estimation.bayesian_results module biogeme.bayesian_estimation.check_shape module biogeme.bayesian_estimation.dimensions module biogeme.bayesian_estimation.html_output module biogeme.bayesian_estimation.pandas_output module biogeme.bayesian_estimation.raw_bayesian_results module biogeme.bayesian_estimation.sampling module biogeme.bayesian_estimation.sampling_strategy module biogeme.biogeme module, [1] biogeme.biogeme_logging module biogeme.catalog.catalog module biogeme.catalog.catalog_iterator module biogeme.catalog.central_controller module biogeme.catalog.configuration module biogeme.catalog.controller module biogeme.catalog.generic_alt_specific_catalog module biogeme.catalog.segmentation_catalog module biogeme.catalog.specification module biogeme.check_parameters module biogeme.cnl module biogeme.constants module biogeme.data.mdcev_data module biogeme.data.optima module biogeme.data.swissmetro module biogeme.database.audit module biogeme.database.container module biogeme.database.mdcev module biogeme.database.panel module biogeme.database.panel_map module biogeme.database.sampling module biogeme.default_parameters module biogeme.deprecated module biogeme.dict_of_formulas module biogeme.distributions module biogeme.draws.factory module biogeme.draws.generators module biogeme.draws.management module biogeme.draws.native_draws module biogeme.draws.pymc_draws module biogeme.exceptions module biogeme.expressions.add_prefix_suffix module biogeme.expressions.audit module biogeme.expressions.base_expressions module biogeme.expressions.bayesian module biogeme.expressions.belongs_to module biogeme.expressions.beta_parameters module biogeme.expressions.binary_expressions module biogeme.expressions.binary_max module biogeme.expressions.binary_min module biogeme.expressions.boxcox module biogeme.expressions.collectors module biogeme.expressions.comparison_expressions module biogeme.expressions.conditional_sum module biogeme.expressions.convert module biogeme.expressions.cos module biogeme.expressions.deprecated module biogeme.expressions.derive module biogeme.expressions.distributed_parameter module biogeme.expressions.divide module biogeme.expressions.draws module biogeme.expressions.elem module biogeme.expressions.elementary_expressions module biogeme.expressions.elementary_types module biogeme.expressions.exp module biogeme.expressions.expm1 module biogeme.expressions.individual_draws module biogeme.expressions.integrate module biogeme.expressions.jax_utils module biogeme.expressions.linear_utility module biogeme.expressions.log module biogeme.expressions.logical_and module biogeme.expressions.logical_or module biogeme.expressions.logit_expressions module biogeme.expressions.logzero module biogeme.expressions.minus module biogeme.expressions.montecarlo module biogeme.expressions.multiple_expressions module biogeme.expressions.multiple_product module biogeme.expressions.multiple_sum module biogeme.expressions.named_expression module biogeme.expressions.normalcdf module biogeme.expressions.numeric_expressions module biogeme.expressions.numeric_tools module biogeme.expressions.ordered module biogeme.expressions.panel_likelihood_trajectory module biogeme.expressions.panel_log_likelihood module biogeme.expressions.plus module biogeme.expressions.power module biogeme.expressions.power_constant module biogeme.expressions.prepare_for_panel module

biogeme.expressions.random_variable module biogeme.expressions.rename_variables module biogeme.expressions.set_panel_id module biogeme.expressions.sin module biogeme.expressions.times module biogeme.expressions.unary_expressions module biogeme.expressions.unary_minus module biogeme.expressions.validation module biogeme.expressions.variable module biogeme.expressions.visitor module biogeme.expressions_registry module biogeme.filenames module biogeme.floating_point module biogeme.function_output module biogeme.jax_calculator.function_call module biogeme.jax_calculator.multiple_formula module biogeme.jax_calculator.simple_formula module biogeme.jax_calculator.single_formula module biogeme.latent_variables.latent_variables module biogeme.latent_variables.likert_indicators module biogeme.latent_variables.measurement_equations module biogeme.latent_variables.ordered_mimic module biogeme.latent_variables.positive_parameter_factory module biogeme.latent_variables.structural_equation module biogeme.likelihood.bootstrap module biogeme.likelihood.linear_regression module biogeme.likelihood.model_estimation module biogeme.likelihood.negative_likelihood module biogeme.loglikelihood module biogeme.lsh module biogeme.mdcev.database_utils module biogeme.mdcev.gamma_profile module biogeme.mdcev.generalized module biogeme.mdcev.mdcev module biogeme.mdcev.non_monotonic module biogeme.mdcev.translated module biogeme.model_elements.audit module biogeme.model_elements.database_adapter module biogeme.model_elements.model_elements module biogeme.models.boxcox module biogeme.models.boxcox_old module biogeme.models.cnl module biogeme.models.logit module biogeme.models.mev module biogeme.models.nested module biogeme.models.ordered module biogeme.models.piecewise module biogeme.multiobjectives module biogeme.nests module biogeme.optimization module biogeme.parameters module biogeme.partition module biogeme.pymc_calculator module biogeme.results module biogeme.results_processing.compilation module biogeme.results_processing.estimation_results module biogeme.results_processing.f12_output module biogeme.results_processing.html_output module biogeme.results_processing.latex_output module biogeme.results_processing.pandas_output module biogeme.results_processing.pareto module biogeme.results_processing.raw_estimation_results module biogeme.results_processing.recycle_pickle module biogeme.results_processing.variance_covariance module biogeme.sampling_of_alternatives.choice_set_generation module biogeme.sampling_of_alternatives.generate_model module biogeme.sampling_of_alternatives.sampling_context module biogeme.sampling_of_alternatives.sampling_of_alternatives module biogeme.second_derivatives module biogeme.segmentation.database module biogeme.segmentation.one_segmentation module biogeme.segmentation.segmentation module biogeme.segmentation.segmentation_context module biogeme.segmentation.segmented_beta module biogeme.tools.checks module biogeme.tools.database module biogeme.tools.derivatives module biogeme.tools.ellipse module biogeme.tools.files module biogeme.tools.formatting module biogeme.tools.jax_multicore module biogeme.tools.likelihood_ratio module biogeme.tools.pandas_to_latex module biogeme.tools.primes module biogeme.tools.pymc_utils module biogeme.tools.serialize_numpy module biogeme.tools.simulate module biogeme.tools.time module biogeme.tools.timeit_context_manager module biogeme.tools.timeit_decorator module biogeme.tools.unique_ids module biogeme.tools.yaml module biogeme.validation.cross_validation module biogeme.validation.prepare_validation module biogeme.validation.split_databases module biogeme.validity module biogeme.version module biogeme_file_name (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) biogeme_parameters (biogeme.biogeme.BIOGEME attribute) BiogemeError BiogemeUnpickler (class in biogeme.results_processing.recycle_pickle) bioLinearUtility() (in module biogeme.expressions.deprecated) bioMax() (in module biogeme.expressions.deprecated) bioMin() (in module biogeme.expressions.deprecated) bioMultSum() (in module biogeme.expressions.deprecated) bioNormalCdf() (in module biogeme.expressions.deprecated) bioResults (class in biogeme.results) bootstrap (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) BOOTSTRAP (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) bootstrap() (in module biogeme.likelihood.bootstrap) bootstrap_sample() (biogeme.database.container.Database method) bootstrap_samples (biogeme.biogeme.BIOGEME attribute), [1] bootstrap_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) bootstrap_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) bounds (biogeme.expressions_registry.ExpressionRegistry property) BoxCox (class in biogeme.expressions.boxcox) boxcox() (in module biogeme.models.boxcox) boxcox_old() (in module biogeme.models.boxcox_old) boxcox_wrong() (in module biogeme.models.boxcox_old) broadcast() (biogeme.expressions_registry.ExpressionRegistry method) build_contiguous_panel_map() (in module biogeme.database.panel_map) build_linear_terms() (in module biogeme.likelihood.linear_regression) build_normalized_formula() (in module biogeme.likelihood.linear_regression) build_ordered_thresholds() (in module biogeme.models.ordered) build_registry() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) build_vectorized_function() (in module biogeme.expressions.jax_utils)

C

calc_p_value() (in module biogeme.results_processing.estimation_results) calculate_baseline_utility() (biogeme.mdcev.mdcev.Mdcev method) calculate_init_likelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_inverse_of_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_inverse_of_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_log_determinant_entries() (biogeme.mdcev.mdcev.Mdcev method) calculate_log_determinant_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) calculate_mu_utility() (biogeme.mdcev.non_monotonic.NonMonotonic method) calculate_null_loglikelihood() (biogeme.biogeme.BIOGEME method), [1] calculate_prime_numbers() (in module biogeme.tools.primes) calculate_single_formula() (in module biogeme.jax_calculator.single_formula) calculate_single_formula_from_expression() (in module biogeme.jax_calculator.single_formula) calculate_test() (biogeme.results_processing.estimation_results.EstimationResults method) calculate_utilities() (biogeme.mdcev.mdcev.Mdcev method) calculates_correlation_matrix() (in module biogeme.results_processing.estimation_results) calculates_estimated_values() (biogeme.segmentation.segmentation.Segmentation method) CallableExpression (class in biogeme.jax_calculator.function_call) Catalog (class in biogeme.catalog.catalog) catalog_name (biogeme.expressions.multiple_expressions.CatalogItem attribute) catalog_size() (biogeme.expressions.multiple_expressions.MultipleExpression method) CatalogItem (class in biogeme.expressions.multiple_expressions) categories (biogeme.latent_variables.likert_indicators.LikertType attribute) center_x (biogeme.tools.ellipse.Ellipse attribute) center_y (biogeme.tools.ellipse.Ellipse attribute) central_controller (biogeme.catalog.specification.Specification attribute) CentralController (class in biogeme.catalog.central_controller) chain_method (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) chains (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) change_init_values() (biogeme.biogeme.BIOGEME method), [1] (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.multiple_expressions.MultipleExpression method) check (biogeme.default_parameters.ParameterTuple attribute) check_algo_name() (in module biogeme.check_parameters) check_availability_of_chosen_alt() (in module biogeme.database.audit) check_calculating_second_derivatives() (in module biogeme.check_parameters) check_consistency_of_named_dicts() (in module biogeme.tools.checks) check_derivatives() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.derivatives) check_expression() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_for_invalid_yaml_values() (in module biogeme.tools.yaml) check_intersection() (biogeme.nests.NestsForNestedLogit method) check_mev_partition() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_names() (biogeme.nests.Nests method) check_parameter_value() (biogeme.parameters.Parameters static method) check_partition() (biogeme.nests.NestsForNestedLogit method) (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_sampling_strategy() (in module biogeme.check_parameters) check_shape() (in module biogeme.bayesian_estimation.check_shape) check_union() (biogeme.nests.Nests method) check_valid_alternatives() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) check_validity() (biogeme.nests.NestsForCrossNestedLogit method) (in module biogeme.dict_of_formulas)

CheckDerivativesResults (class in biogeme.tools.derivatives) children (biogeme.expressions.base_expressions.Expression attribute) choice (biogeme.expressions.base_expressions.LogitTuple attribute) (biogeme.expressions.logit_expressions.LogLogit attribute) choice_availability_statistics() (in module biogeme.database.audit) choice_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) ChoiceSetsGeneration (class in biogeme.sampling_of_alternatives.choice_set_generation) chosen (biogeme.database.audit.ChosenAvailable attribute) ChosenAvailable (class in biogeme.database.audit) cnl() (in module biogeme.models.cnl) cnl_avail() (in module biogeme.models.cnl) cnl_CDF() (in module biogeme.cnl) cnl_cdf() (in module biogeme.cnl) cnl_G() (in module biogeme.cnl) cnl_g() (in module biogeme.cnl) cnl_nests (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) cnlmu() (in module biogeme.models.cnl) coefficient (biogeme.latent_variables.latent_variables.Normalization attribute) collect_init_values() (in module biogeme.expressions.collectors) column_exists() (biogeme.database.container.Database method) combined_variables (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) compare_parameters() (in module biogeme.results_processing.latex_output) ComparisonOperator (class in biogeme.expressions.comparison_expressions) compile_estimation_results() (in module biogeme.results_processing.compilation) compile_results_in_directory() (in module biogeme.results_processing.compilation) CompiledFormulaEvaluator (class in biogeme.jax_calculator.single_formula) complete_dict_of_free_beta_values() (biogeme.expressions_registry.ExpressionRegistry method) condition (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) condition_number (biogeme.results_processing.estimation_results.EstimationResults property) ConditionalSum (class in biogeme.expressions.conditional_sum) ConditionalTermTuple (class in biogeme.expressions.conditional_sum) confidence_intervals() (biogeme.biogeme.BIOGEME method), [1] config_id (biogeme.catalog.specification.Specification property) Configuration (class in biogeme.catalog.configuration) configure_expression() (biogeme.catalog.specification.Specification method) contains_log_likelihood() (biogeme.biogeme.BIOGEME method), [1] contains_python_tags() (in module biogeme.tools.yaml) ContiguousPanelMap (class in biogeme.database.panel_map) controller (biogeme.catalog.configuration.SelectionTuple attribute) Controller (class in biogeme.catalog.controller) controller_size() (biogeme.catalog.controller.Controller method) convergence (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) convert_random_generator_tuple() (in module biogeme.draws.native_draws) convert_to_dict() (in module biogeme.function_output) cores (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) correlation() (biogeme.nests.NestsForCrossNestedLogit method) (biogeme.nests.NestsForNestedLogit method) cos (class in biogeme.expressions.cos) cos_phi (biogeme.tools.ellipse.Ellipse attribute) count_cpu_devices() (in module biogeme.tools.jax_multicore) count_number_of_groups() (in module biogeme.tools.database) count_number_of_specifications() (in module biogeme.catalog.central_controller) countNumberOfGroups() (in module biogeme.tools.database) counts (biogeme.database.panel_map.ContiguousPanelMap attribute) covariance() (biogeme.nests.NestsForCrossNestedLogit method) create_backup() (in module biogeme.tools.files) create_function_simple_expression() (in module biogeme.jax_calculator.simple_formula) cross_validate_model() (in module biogeme.validation.cross_validation) CrossVariableTuple (class in biogeme.sampling_of_alternatives.sampling_context) current_name() (biogeme.catalog.controller.Controller method)

D

data_jax (biogeme.database.container.Database property) data_name (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) database (biogeme.catalog.specification.Specification attribute) (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) Database (class in biogeme.database.container) dataframe (biogeme.database.container.Database property) dataframe_to_latex_decimal() (in module biogeme.tools.pandas_to_latex) decreased_controller() (biogeme.catalog.central_controller.CentralController method) deep_flat_copy() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method)

default_specification() (biogeme.catalog.specification.Specification class method) define_new_variables() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) define_variable() (biogeme.database.container.Database method) DefineVariable() (biogeme.database.container.Database method) delegate_to_selected() (in module biogeme.expressions.multiple_expressions) deprecated() (in module biogeme.deprecated) deprecated_parameters() (in module biogeme.deprecated) deprecated_wrapper() (in module biogeme.expressions.deprecated) derivative_utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Derive (class in biogeme.expressions.derive) describe() (biogeme.catalog.specification.Specification method) describe_strategies() (in module biogeme.bayesian_estimation.sampling_strategy) description (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) description_of_native_draws() (in module biogeme.draws.native_draws) deserialize_from_yaml() (in module biogeme.results_processing.raw_estimation_results) dict_of_alpha (biogeme.nests.OneNestForCrossNestedLogit attribute) dict_of_expressions (biogeme.expressions.elem.Elem attribute) Dimension (class in biogeme.expressions.bayesian) dimension() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) DisaggregateFunctionOutput (class in biogeme.function_output) DiscreteSegmentationTuple (class in biogeme.segmentation.segmentation_context) display_messages() (in module biogeme.audit_tuple) DistributedParameter (class in biogeme.expressions.distributed_parameter) Divide (class in biogeme.expressions.divide) documentation (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) dogleg (biogeme.biogeme.BIOGEME attribute), [1] draw_confidence_ellipse() (in module biogeme.results_processing.latex_output) draw_dimension (biogeme.expressions.draws.Draws property) draw_ellipse() (in module biogeme.tools.ellipse) draw_type (biogeme.draws.factory.DrawSpec attribute) (biogeme.latent_variables.ordered_mimic.OrderedMimic attribute) draw_type_jax (biogeme.latent_variables.latent_variables.LatentVariable attribute) draw_types() (biogeme.expressions_registry.ExpressionRegistry method) DrawFactory (class in biogeme.draws.factory) draws (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) DRAWS (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) draws (biogeme.expressions_registry.ExpressionRegistry property) Draws (class in biogeme.expressions.draws) draws_indices (biogeme.expressions_registry.ExpressionRegistry property) draws_jax (biogeme.draws.management.DrawsManagement property) draws_management (biogeme.model_elements.model_elements.ModelElements property) draws_names (biogeme.expressions_registry.ExpressionRegistry property) draws_processing_time (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) DrawsManagement (class in biogeme.draws.management) DrawSpec (class in biogeme.draws.factory) dummy_database() (biogeme.database.container.Database class method) dump() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) dump_file() (biogeme.parameters.Parameters method) dump_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults method) DuplicateError

E

effective_sample_size_bulk (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) effective_sample_size_tail (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) eigen_structure() (biogeme.results_processing.estimation_results.EstimationResults method) Elem (class in biogeme.expressions.elem) Elementary (class in biogeme.expressions.elementary_expressions) ElementsTuple (class in biogeme.expressions_registry) Ellipse (class in biogeme.tools.ellipse) embed_expression() (biogeme.expressions.base_expressions.Expression method) EmptyListOfParameters enlarging_factor (biogeme.biogeme.BIOGEME attribute), [1] ensure_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) Equal (class in biogeme.expressions.comparison_expressions) errors (biogeme.audit_tuple.AuditTuple attribute) errors_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) errors_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) estimate() (biogeme.biogeme.BIOGEME method), [1] estimate_catalog() (biogeme.biogeme.BIOGEME method), [1] estimate_parameters() (biogeme.mdcev.mdcev.Mdcev method) EstimatedBeta (class in biogeme.bayesian_estimation.bayesian_results) EstimateVarianceCovariance (class in biogeme.results_processing.variance_covariance) estimation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) estimation_mode (biogeme.latent_variables.ordered_mimic.OrderedMimic attribute) estimation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) estimation_results (biogeme.mdcev.mdcev.Mdcev property) EstimationMode (class in biogeme.latent_variables.ordered_mimic) EstimationResults (class in biogeme.results_processing.estimation_results) EstimationValidationIndices (class in biogeme.validation.prepare_validation) EstimationValidationModels (class in biogeme.validation.split_databases) evaluate() (biogeme.jax_calculator.multiple_formula.MultiRowEvaluator method) (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_expression() (in module biogeme.jax_calculator.single_formula)

evaluate_formula() (in module biogeme.jax_calculator.single_formula) evaluate_individual() (biogeme.jax_calculator.single_formula.CompiledFormulaEvaluator method) evaluate_model_per_row() (in module biogeme.jax_calculator.single_formula) evaluate_simple_expression() (in module biogeme.jax_calculator.simple_formula) evaluate_simple_expression_per_row() (in module biogeme.jax_calculator.simple_formula) exp (class in biogeme.expressions.exp) expected_log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) explanatory_variables (biogeme.latent_variables.structural_equation.StructuralEquation attribute) expm1 (class in biogeme.expressions.expm1) expression (biogeme.expressions.multiple_expressions.NamedExpression attribute) Expression (class in biogeme.expressions.base_expressions) expression() (biogeme.latent_variables.structural_equation.StructuralEquation method) expression_configuration_iterator() (biogeme.catalog.central_controller.CentralController method) expression_iterator() (biogeme.catalog.central_controller.CentralController method) expression_to_value() (in module biogeme.expressions.convert) expression_type (biogeme.expressions.beta_parameters.Beta property) (biogeme.expressions.draws.Draws attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.random_variable.RandomVariable attribute) (biogeme.expressions.variable.Variable attribute) ExpressionCollector (class in biogeme.expressions.collectors) ExpressionRegistry (class in biogeme.expressions_registry) expressions (biogeme.expressions_registry.ElementsTuple attribute) (biogeme.expressions_registry.ExpressionRegistry property) expressions_names_indices() (in module biogeme.expressions_registry) expressions_registry (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) ExpressionVisitor (class in biogeme.expressions.visitor) extract_multiple_expressions_controllers() (in module biogeme.catalog.central_controller) extract_rows() (biogeme.database.container.Database method) extract_slice() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method)

F

FigureSize (class in biogeme.bayesian_estimation.html_output) FileNotFound files_of_type() (in module biogeme.tools.files) final_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) final_loglikelihood (biogeme.results_processing.estimation_results.EstimationResults property) find_class() (biogeme.results_processing.recycle_pickle.BiogemeUnpickler method) findiff_g() (in module biogeme.tools.derivatives) findiff_h() (in module biogeme.tools.derivatives) FINITE_DIFFERENCES (biogeme.second_derivatives.SecondDerivativesMode attribute) finite_differences_gradient (biogeme.tools.derivatives.CheckDerivativesResults attribute) finite_differences_hessian (biogeme.tools.derivatives.CheckDerivativesResults attribute) fix_betas() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) fix_first_cut_point_for_non_symmetric_thresholds (biogeme.latent_variables.likert_indicators.LikertType attribute) FIXED_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) fixed_beta_values (biogeme.expressions.base_expressions.Expression attribute) fixed_betas (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) fixed_betas_values (biogeme.expressions_registry.ExpressionRegistry property) FlatPanelAdapter (class in biogeme.model_elements.database_adapter) flatten_database() (biogeme.database.panel.PanelDatabase method) (in module biogeme.tools.database) forecast() (biogeme.mdcev.mdcev.Mdcev method) forecast_bisection_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_bruteforce_one_draw() (biogeme.mdcev.mdcev.Mdcev method) forecast_comparison_one_draw() (biogeme.mdcev.mdcev.Mdcev method) format_comment() (in module biogeme.parameters) format_elapsed_time() (in module biogeme.tools.time) format_memory_size() (in module biogeme.tools.formatting) format_real_number() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) (in module biogeme.results_processing.latex_output) format_timedelta() (in module biogeme.tools.time) format_with_period() (in module biogeme.results_processing.latex_output)

formula (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute) formula_names (biogeme.model_elements.model_elements.ModelElements property) FREE_BETA (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) free_betas (biogeme.expressions_registry.ExpressionRegistry property) free_betas_indices (biogeme.expressions_registry.ExpressionRegistry property) free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) free_betas_names (biogeme.biogeme.BIOGEME property), [1] (biogeme.expressions_registry.ExpressionRegistry property) (biogeme.model_elements.model_elements.ModelElements property) from_configuration() (biogeme.biogeme.BIOGEME class method), [1] from_configuration_and_controller() (biogeme.biogeme.BIOGEME class method), [1] from_dict() (biogeme.catalog.catalog.Catalog class method) (biogeme.catalog.configuration.Configuration class method) from_expression_and_weight() (biogeme.model_elements.model_elements.ModelElements class method) from_netcdf() (biogeme.bayesian_estimation.bayesian_results.BayesianResults class method) from_pickle_file() (biogeme.results_processing.estimation_results.EstimationResults class method) from_string() (biogeme.catalog.configuration.Configuration class method) from_string_id() (biogeme.catalog.specification.Specification class method) from_tuple() (biogeme.draws.native_draws.RandomNumberGeneratorTuple class method) (biogeme.nests.OneNestForCrossNestedLogit class method) (biogeme.nests.OneNestForNestedLogit class method) from_tuple_of_configurations() (biogeme.catalog.configuration.Configuration class method) from_yaml_file() (biogeme.results_processing.estimation_results.EstimationResults class method) function (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.tools.derivatives.CheckDerivativesResults attribute) function_evaluator (biogeme.biogeme.BIOGEME property), [1] function_from_compiled_formula() (in module biogeme.jax_calculator.function_call) function_from_expression() (in module biogeme.jax_calculator.function_call) function_output (biogeme.function_output.NamedFunctionOutput attribute) function_parameters (biogeme.biogeme.BIOGEME property), [1] FunctionOutput (class in biogeme.function_output) functions (biogeme.function_output.DisaggregateFunctionOutput attribute)

G

gamma_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) GammaProfile (class in biogeme.mdcev.gamma_profile) Generalized (class in biogeme.mdcev.generalized) generate_document() (biogeme.parameters.Parameters method) generate_draws() (biogeme.draws.factory.DrawFactory method) (biogeme.draws.management.DrawsManagement method) generate_epsilons() (biogeme.mdcev.mdcev.Mdcev method) generate_f12_file() (in module biogeme.results_processing.f12_output) generate_general_information() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) generate_html (biogeme.biogeme.BIOGEME attribute), [1] generate_html_file() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) generate_html_simulated_data() (in module biogeme.bayesian_estimation.html_output) generate_latex_file() (in module biogeme.results_processing.latex_output) generate_latex_file_content() (in module biogeme.results_processing.latex_output) generate_named_output() (biogeme.model_elements.model_elements.ModelElements method) generate_netcdf (biogeme.biogeme.BIOGEME attribute), [1] generate_one_row() (in module biogeme.bayesian_estimation.html_output) generate_operator() (biogeme.assisted.AssistedSpecification method) generate_pickle (biogeme.biogeme.BIOGEME property), [1] generate_segment_size() (in module biogeme.sampling_of_alternatives.sampling_of_alternatives) generate_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) generate_unique_ids() (in module biogeme.tools.unique_ids) generate_utility() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) generate_yaml (biogeme.biogeme.BIOGEME attribute), [1] GenerateModel (class in biogeme.sampling_of_alternatives.generate_model) generator (biogeme.draws.factory.DrawSpec attribute) (biogeme.draws.native_draws.RandomNumberGeneratorTuple attribute) generic_alt_specific_catalogs() (in module biogeme.catalog.generic_alt_specific_catalog) generic_name (biogeme.catalog.specification.Specification attribute) get_all_controllers() (biogeme.catalog.catalog.Catalog method) get_alpha_dict() (biogeme.nests.NestsForCrossNestedLogit method) get_alpha_values() (biogeme.nests.NestsForCrossNestedLogit method) get_antithetic() (in module biogeme.draws.generators) get_attributes_from_expression() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) get_beta() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_beta_ref_name() (biogeme.segmentation.segmentation.Segmentation method) get_beta_values() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.results_processing.estimation_results.EstimationResults method) get_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_betas_for_sensitivity_analysis() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.results_processing.estimation_results.EstimationResults method) get_children() (biogeme.expressions.base_expressions.Expression method) get_class_name() (biogeme.expressions.base_expressions.Expression method) get_column() (biogeme.database.container.Database method) get_complete_betas_array() (biogeme.expressions_registry.ExpressionRegistry method) get_confidence_ellipse() (biogeme.results_processing.estimation_results.EstimationResults method) get_configuration() (biogeme.catalog.central_controller.CentralController method) get_copy() (biogeme.database.container.Database method) get_cross_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_default_value() (in module biogeme.parameters) get_default_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_dict_expressions() (in module biogeme.expressions.convert) get_dict_values() (in module biogeme.expressions.convert) get_distribution() (in module biogeme.draws.pymc_draws) get_element() (biogeme.catalog.specification.Specification method) get_elementary_expression() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_estimated_parameters() (biogeme.results_processing.estimation_results.EstimationResults method) get_expression() (in module biogeme.dict_of_formulas) get_expression_deterministic_part() (biogeme.latent_variables.structural_equation.StructuralEquation method) get_f12() (in module biogeme.results_processing.f12_output) get_file_logger() (in module biogeme.biogeme_logging) get_file_size() (in module biogeme.tools.files) get_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) get_generator() (biogeme.draws.factory.DrawFactory method) get_halton_draws() (in module biogeme.draws.generators) get_html() (biogeme.catalog.configuration.Configuration method) (in module biogeme.version) get_html_arviz_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_condition_number() (in module biogeme.results_processing.html_output) get_html_correlation_results() (in module biogeme.results_processing.html_output) get_html_estimated_parameters() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_footer() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_general_statistics() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_header() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_identification_diagnostics() (in module biogeme.bayesian_estimation.html_output) get_html_one_pair_of_parameters() (in module biogeme.results_processing.html_output) get_html_one_parameter() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_html_preamble() (in module biogeme.bayesian_estimation.html_output) (in module biogeme.results_processing.html_output) get_index() (biogeme.catalog.segmentation_catalog.SegmentedParameters method) get_iterator() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) get_latent_variable() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) get_latex() (in module biogeme.version) get_latex_estimated_parameters() (in module biogeme.results_processing.latex_output) get_latex_general_statistics() (in module biogeme.results_processing.latex_output) get_latex_one_parameter() (in module biogeme.results_processing.latex_output) get_latex_preamble() (in module biogeme.results_processing.latex_output) get_latin_hypercube_draws() (in module biogeme.draws.generators) get_likert_indicator() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) get_likert_type() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) get_list_of_available_distributions() (in module biogeme.draws.pymc_draws)

get_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_lsh_weights() (in module biogeme.lsh) get_lv_coefficient_parameter() (biogeme.latent_variables.likert_indicators.LikertIndicator method) get_lv_coefficient_parameter_name() (biogeme.latent_variables.likert_indicators.LikertIndicator method) get_mev_for_cross_nested() (in module biogeme.models.cnl) get_mev_for_cross_nested_mu() (in module biogeme.models.cnl) get_mev_for_nested() (in module biogeme.models.nested) get_mev_for_nested_mu() (in module biogeme.models.nested) get_mev_generating_for_nested() (in module biogeme.models.nested) get_named_betas_values() (biogeme.expressions_registry.ExpressionRegistry method) get_nest() (in module biogeme.nests) get_nested_logit() (biogeme.sampling_of_alternatives.generate_model.GenerateModel method) get_new_file_name() (in module biogeme.filenames) get_normal_wichura_draws() (in module biogeme.draws.generators) get_operator_decreased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_increased_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) get_operator_two_controllers() (biogeme.catalog.central_controller.CentralController method) get_pandas_correlation_results() (in module biogeme.results_processing.pandas_output) get_pandas_estimated_parameters() (in module biogeme.bayesian_estimation.pandas_output) (in module biogeme.results_processing.pandas_output) get_pandas_one_pair_of_parameters() (in module biogeme.results_processing.pandas_output) get_pandas_one_parameter() (in module biogeme.results_processing.pandas_output) get_pandas_other_variables() (in module biogeme.bayesian_estimation.pandas_output) get_param_tuple() (biogeme.parameters.Parameters method) get_parameter_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_p_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_std_err_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_t_test_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value() (biogeme.results_processing.estimation_results.EstimationResults method) get_parameter_value_from_index() (biogeme.results_processing.estimation_results.EstimationResults method) get_prime_numbers() (in module biogeme.tools.primes) get_reference_beta() (biogeme.segmentation.segmentation.Segmentation method) get_results() (biogeme.catalog.specification.Specification method) get_screen_logger() (in module biogeme.biogeme_logging) get_selection() (biogeme.catalog.configuration.Configuration method) get_sign_for_p_value() (in module biogeme.results_processing.latex_output) get_string_id() (biogeme.catalog.configuration.Configuration method) get_sub_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_text() (in module biogeme.version) get_thresholds() (biogeme.latent_variables.likert_indicators.LikertType method) get_uniform() (in module biogeme.draws.generators) get_value() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.parameters.Parameters method) get_value_and_derivatives() (in module biogeme.jax_calculator.single_formula) get_value_c() (in module biogeme.jax_calculator.single_formula) get_variance_covariance_matrix() (biogeme.results_processing.estimation_results.EstimationResults method) get_version() (in module biogeme.version) getHtml() (in module biogeme.version) getLaTeX() (in module biogeme.version) getMevForCrossNested() (in module biogeme.models.cnl) getMevForCrossNestedMu() (in module biogeme.models.cnl) getMevForNested() (in module biogeme.models.nested) getMevForNestedMu() (in module biogeme.models.nested) getMevGeneratingForNested() (in module biogeme.models.nested) getText() (in module biogeme.version) getValue() (biogeme.expressions.logit_expressions.LogLogit method) getVersion() (in module biogeme.version) gradient (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) gradient_norm (biogeme.results_processing.estimation_results.EstimationResults property) gradients (biogeme.function_output.DisaggregateFunctionOutput attribute) Greater (class in biogeme.expressions.comparison_expressions) GreaterOrEqual (class in biogeme.expressions.comparison_expressions)

H

halton2() (in module biogeme.draws.native_draws) halton3() (in module biogeme.draws.native_draws) halton5() (in module biogeme.draws.native_draws) hdi_high (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) hdi_low (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) hdi_prob (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute)

hessian (biogeme.function_output.FunctionOutput attribute) (biogeme.function_output.NamedFunctionOutput attribute) (biogeme.function_output.NamedFunctionResult attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) hessians (biogeme.function_output.DisaggregateFunctionOutput attribute) html_filename (biogeme.biogeme.BIOGEME attribute)

I

id_column (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) idata (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) identification_chosen_alternatives() (biogeme.mdcev.mdcev.Mdcev method) identification_diagnostics() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) import_document() (biogeme.parameters.Parameters method) include_cnl_alphas() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) increased_controller() (biogeme.catalog.central_controller.CentralController method) index_of() (in module biogeme.expressions.logit_expressions) indicator (biogeme.latent_variables.latent_variables.Normalization attribute) indicators (biogeme.latent_variables.latent_variables.LatentVariable attribute) indices (biogeme.expressions_registry.ElementsTuple attribute) individual_draws() (in module biogeme.expressions.individual_draws) individual_draws_handler() (in module biogeme.expressions.individual_draws) INDIVIDUALS (biogeme.expressions.bayesian.Dimension attribute) individuals (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) indptr (biogeme.database.panel_map.ContiguousPanelMap attribute) infeasible_cg (biogeme.biogeme.BIOGEME attribute), [1] info_gamma_parameters() (biogeme.mdcev.mdcev.Mdcev method) init (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) init_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1] initial_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) initial_radius (biogeme.biogeme.BIOGEME attribute), [1] insert_valid_keyword() (in module biogeme.dict_of_formulas) Integrate() (in module biogeme.expressions.deprecated)

IntegrateNormal (class in biogeme.expressions.integrate) intercept_parameter (biogeme.latent_variables.likert_indicators.LikertIndicator property) intercept_parameter_name (biogeme.latent_variables.likert_indicators.LikertIndicator property) intersection() (biogeme.nests.OneNestForNestedLogit method) is_any_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_boolean() (in module biogeme.check_parameters) is_bound_active() (biogeme.results_processing.estimation_results.EstimationResults method) is_complex() (biogeme.expressions.base_expressions.Expression method) is_empty() (biogeme.database.container.Database method) is_fixed (biogeme.expressions.beta_parameters.Beta property) is_free (biogeme.expressions.beta_parameters.Beta property) is_hessian_available (biogeme.results_processing.estimation_results.EstimationResults property) is_integer() (in module biogeme.check_parameters) is_model_complex() (biogeme.biogeme.BIOGEME method), [1] is_next_alternative_chosen() (biogeme.mdcev.mdcev.Mdcev method) is_non_negative() (in module biogeme.check_parameters) is_number() (in module biogeme.check_parameters) is_numeric() (in module biogeme.expressions.numeric_tools) is_panel() (biogeme.database.container.Database method) is_positive() (in module biogeme.check_parameters) is_similar_to() (in module biogeme.dict_of_formulas) is_valid() (biogeme.assisted.AssistedSpecification method) is_valid_filename() (in module biogeme.tools.files) issue_deprecation_warning() (in module biogeme.deprecated) item_index (biogeme.expressions.multiple_expressions.CatalogItem attribute) item_name (biogeme.expressions.multiple_expressions.CatalogItem attribute)

L

LARGE (biogeme.bayesian_estimation.html_output.FigureSize attribute) largest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) largest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) latent_variables (biogeme.latent_variables.ordered_mimic.OrderedMimic property) LatentVariable (class in biogeme.latent_variables.latent_variables) Less (class in biogeme.expressions.comparison_expressions) LessOrEqual (class in biogeme.expressions.comparison_expressions) likelihood_ratio_init (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_null (biogeme.results_processing.estimation_results.EstimationResults property) likelihood_ratio_test() (biogeme.results_processing.estimation_results.EstimationResults method) (in module biogeme.tools.likelihood_ratio) likelihoodregression() (in module biogeme.loglikelihood) likert_indicators (biogeme.latent_variables.ordered_mimic.OrderedMimic attribute) likert_types (biogeme.latent_variables.ordered_mimic.OrderedMimic attribute) LikertIndicator (class in biogeme.latent_variables.likert_indicators) LikertType (class in biogeme.latent_variables.likert_indicators) LinearTermTuple (class in biogeme.expressions.linear_utility) LinearUtility (class in biogeme.expressions.linear_utility) list_array_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) list_of_all_betas_in_expression() (in module biogeme.expressions.collectors) list_of_alternatives (biogeme.nests.OneNestForNestedLogit attribute) list_of_code() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_draws_in_expression() (in module biogeme.expressions.collectors) list_of_expressions() (biogeme.segmentation.one_segmentation.OneSegmentation method) list_of_fixed_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_in_expression() (in module biogeme.expressions.collectors) list_of_free_betas_init_values (biogeme.expressions_registry.ExpressionRegistry property) list_of_random_variables_in_expression() (in module biogeme.expressions.collectors) list_of_terms (biogeme.expressions.linear_utility.LinearUtility attribute) list_of_variables_in_expression() (in module biogeme.expressions.collectors) load() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults class method) log (class in biogeme.expressions.log) log_like (biogeme.biogeme.BIOGEME property), [1] log_like_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] log_like_valid_names (biogeme.biogeme.BIOGEME attribute) log_likelihood (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) log_measurement_equations() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) log_measurement_equations_jax() (in module biogeme.latent_variables.measurement_equations) log_ordered_logit() (in module biogeme.models.ordered) log_ordered_logit_from_thresholds() (in module biogeme.models.ordered)

log_ordered_probit() (in module biogeme.models.ordered) log_ordered_probit_from_thresholds() (in module biogeme.models.ordered) log_statistics() (biogeme.assisted.ParetoPostProcessing method) logcnl() (in module biogeme.models.cnl) logcnl_avail() (in module biogeme.models.cnl) logcnlmu() (in module biogeme.models.cnl) logger (in module biogeme.database.container) (in module biogeme.segmentation.database) logisticcdf() (in module biogeme.distributions) logit() (in module biogeme.models.logit) logit_choice_avail() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.multiple_expressions.MultipleExpression method) LogitTuple (class in biogeme.expressions.base_expressions) loglike (biogeme.biogeme.BIOGEME property), [1] loglikelihood (biogeme.model_elements.model_elements.ModelElements property) loglikelihood() (biogeme.mdcev.mdcev.Mdcev method) (in module biogeme.loglikelihood) loglikelihood_dimension() (in module biogeme.multiobjectives) loglikelihood_name (biogeme.model_elements.model_elements.ModelElements attribute) loglikelihoodregression() (in module biogeme.loglikelihood) LogLogit (class in biogeme.expressions.logit_expressions) loglogit() (in module biogeme.models.logit) logmev() (in module biogeme.models.mev) logmev_endogenous_sampling() (in module biogeme.models.mev) logmev_endogenousSampling() (in module biogeme.models.mev) lognested() (in module biogeme.models.nested) lognested_mev_mu() (in module biogeme.models.nested) lognestedMevMu() (in module biogeme.models.nested) lognormalpdf() (in module biogeme.distributions) logzero (class in biogeme.expressions.logzero) loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) loo_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) loo_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) lower_bound_dual_variable() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) lower_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) LRTuple (class in biogeme.tools.likelihood_ratio)

M

make_draw_specs() (biogeme.draws.factory.DrawFactory method) make_positive_parameter_factory() (in module biogeme.latent_variables.positive_parameter_factory) make_sampling_config() (in module biogeme.bayesian_estimation.sampling_strategy) make_sigma_factory() (in module biogeme.latent_variables.positive_parameter_factory) mapping (biogeme.function_output.NamedFunctionOutput attribute) max_iterations (biogeme.biogeme.BIOGEME attribute), [1] max_number_parameters_to_report (biogeme.biogeme.BIOGEME attribute), [1] max_treedepth (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) MAXIMUM_LIKELIHOOD (biogeme.latent_variables.ordered_mimic.EstimationMode attribute) maximum_number_catalog_expressions (biogeme.biogeme.BIOGEME attribute), [1] maximum_number_of_observations_per_individual (biogeme.biogeme.BIOGEME attribute) maximum_number_parameters (biogeme.catalog.specification.Specification attribute) Mdcev (class in biogeme.mdcev.mdcev) mdcev_count() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) mdcev_row_split() (in module biogeme.database.mdcev) (in module biogeme.mdcev.database_utils) MdcevConfiguration (class in biogeme.mdcev.mdcev) mean (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MEAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) measurement_equations() (biogeme.latent_variables.ordered_mimic.OrderedMimic method) measurement_equations_jax() (in module biogeme.latent_variables.measurement_equations) median (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MEDIAN (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) MEDIUM (biogeme.bayesian_estimation.html_output.FigureSize attribute) merge_audit_tuples() (in module biogeme.audit_tuple) message (biogeme.tools.likelihood_ratio.LRTuple attribute) mev() (in module biogeme.models.mev) mev_endogenous_sampling() (in module biogeme.models.mev) mev_endogenousSampling() (in module biogeme.models.mev) mev_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_prefix (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) mev_sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) mev_sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) Minus (class in biogeme.expressions.minus) mixedloglikelihood() (in module biogeme.loglikelihood) MLHS_anti() (in module biogeme.draws.native_draws) mode (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) MODE (biogeme.bayesian_estimation.bayesian_results.PosteriorSummary attribute) model_elements (biogeme.biogeme.BIOGEME property), [1] model_estimation() (in module biogeme.likelihood.model_estimation) model_name (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) model_names (biogeme.catalog.specification.Specification attribute) ModelElements (class in biogeme.model_elements.model_elements) ModelElementsAdapter (class in biogeme.model_elements.database_adapter) modelName (biogeme.biogeme.BIOGEME property), [1] ModelNames (class in biogeme.tools.unique_ids) modify_controller() (biogeme.catalog.controller.Controller method) modify_random_controllers() (biogeme.catalog.central_controller.CentralController method) module biogeme.assisted biogeme.audit_tuple biogeme.bayesian_estimation.bayesian_results biogeme.bayesian_estimation.check_shape biogeme.bayesian_estimation.dimensions biogeme.bayesian_estimation.html_output biogeme.bayesian_estimation.pandas_output biogeme.bayesian_estimation.raw_bayesian_results biogeme.bayesian_estimation.sampling biogeme.bayesian_estimation.sampling_strategy biogeme.biogeme, [1] biogeme.biogeme_logging biogeme.catalog.catalog biogeme.catalog.catalog_iterator biogeme.catalog.central_controller biogeme.catalog.configuration biogeme.catalog.controller biogeme.catalog.generic_alt_specific_catalog biogeme.catalog.segmentation_catalog biogeme.catalog.specification biogeme.check_parameters biogeme.cnl biogeme.constants biogeme.data.mdcev_data biogeme.data.optima biogeme.data.swissmetro biogeme.database.audit biogeme.database.container biogeme.database.mdcev biogeme.database.panel biogeme.database.panel_map biogeme.database.sampling biogeme.default_parameters biogeme.deprecated biogeme.dict_of_formulas biogeme.distributions biogeme.draws.factory biogeme.draws.generators biogeme.draws.management biogeme.draws.native_draws biogeme.draws.pymc_draws biogeme.exceptions biogeme.expressions.add_prefix_suffix biogeme.expressions.audit biogeme.expressions.base_expressions biogeme.expressions.bayesian biogeme.expressions.belongs_to biogeme.expressions.beta_parameters biogeme.expressions.binary_expressions biogeme.expressions.binary_max biogeme.expressions.binary_min biogeme.expressions.boxcox biogeme.expressions.collectors biogeme.expressions.comparison_expressions biogeme.expressions.conditional_sum biogeme.expressions.convert biogeme.expressions.cos biogeme.expressions.deprecated biogeme.expressions.derive biogeme.expressions.distributed_parameter biogeme.expressions.divide biogeme.expressions.draws biogeme.expressions.elem biogeme.expressions.elementary_expressions biogeme.expressions.elementary_types biogeme.expressions.exp biogeme.expressions.expm1 biogeme.expressions.individual_draws biogeme.expressions.integrate biogeme.expressions.jax_utils biogeme.expressions.linear_utility biogeme.expressions.log biogeme.expressions.logical_and biogeme.expressions.logical_or biogeme.expressions.logit_expressions biogeme.expressions.logzero biogeme.expressions.minus biogeme.expressions.montecarlo biogeme.expressions.multiple_expressions biogeme.expressions.multiple_product biogeme.expressions.multiple_sum biogeme.expressions.named_expression biogeme.expressions.normalcdf biogeme.expressions.numeric_expressions biogeme.expressions.numeric_tools biogeme.expressions.ordered biogeme.expressions.panel_likelihood_trajectory biogeme.expressions.panel_log_likelihood biogeme.expressions.plus biogeme.expressions.power biogeme.expressions.power_constant biogeme.expressions.prepare_for_panel biogeme.expressions.random_variable biogeme.expressions.rename_variables biogeme.expressions.set_panel_id biogeme.expressions.sin biogeme.expressions.times biogeme.expressions.unary_expressions biogeme.expressions.unary_minus biogeme.expressions.validation biogeme.expressions.variable biogeme.expressions.visitor biogeme.expressions_registry biogeme.filenames biogeme.floating_point biogeme.function_output biogeme.jax_calculator.function_call biogeme.jax_calculator.multiple_formula biogeme.jax_calculator.simple_formula biogeme.jax_calculator.single_formula biogeme.latent_variables.latent_variables biogeme.latent_variables.likert_indicators biogeme.latent_variables.measurement_equations biogeme.latent_variables.ordered_mimic biogeme.latent_variables.positive_parameter_factory biogeme.latent_variables.structural_equation biogeme.likelihood.bootstrap biogeme.likelihood.linear_regression biogeme.likelihood.model_estimation biogeme.likelihood.negative_likelihood biogeme.loglikelihood biogeme.lsh biogeme.mdcev.database_utils biogeme.mdcev.gamma_profile biogeme.mdcev.generalized biogeme.mdcev.mdcev biogeme.mdcev.non_monotonic biogeme.mdcev.translated biogeme.model_elements.audit biogeme.model_elements.database_adapter biogeme.model_elements.model_elements biogeme.models.boxcox biogeme.models.boxcox_old biogeme.models.cnl biogeme.models.logit biogeme.models.mev biogeme.models.nested biogeme.models.ordered biogeme.models.piecewise biogeme.multiobjectives biogeme.nests biogeme.optimization biogeme.parameters biogeme.partition biogeme.pymc_calculator biogeme.results biogeme.results_processing.compilation biogeme.results_processing.estimation_results biogeme.results_processing.f12_output biogeme.results_processing.html_output biogeme.results_processing.latex_output biogeme.results_processing.pandas_output biogeme.results_processing.pareto biogeme.results_processing.raw_estimation_results biogeme.results_processing.recycle_pickle biogeme.results_processing.variance_covariance biogeme.sampling_of_alternatives.choice_set_generation biogeme.sampling_of_alternatives.generate_model biogeme.sampling_of_alternatives.sampling_context biogeme.sampling_of_alternatives.sampling_of_alternatives biogeme.second_derivatives biogeme.segmentation.database biogeme.segmentation.one_segmentation biogeme.segmentation.segmentation biogeme.segmentation.segmentation_context biogeme.segmentation.segmented_beta biogeme.tools.checks biogeme.tools.database biogeme.tools.derivatives biogeme.tools.ellipse biogeme.tools.files biogeme.tools.formatting biogeme.tools.jax_multicore biogeme.tools.likelihood_ratio biogeme.tools.pandas_to_latex biogeme.tools.primes biogeme.tools.pymc_utils biogeme.tools.serialize_numpy biogeme.tools.simulate biogeme.tools.time biogeme.tools.timeit_context_manager biogeme.tools.timeit_decorator biogeme.tools.unique_ids biogeme.tools.yaml biogeme.validation.cross_validation biogeme.validation.prepare_validation biogeme.validation.split_databases biogeme.validity biogeme.version

monte_carlo (biogeme.results_processing.estimation_results.EstimationResults property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) MonteCarlo (class in biogeme.expressions.montecarlo) MultipleExpression (class in biogeme.expressions.multiple_expressions) MultipleProduct (class in biogeme.expressions.multiple_product) MultipleSum (class in biogeme.expressions.multiple_sum) MultiRowEvaluator (class in biogeme.jax_calculator.multiple_formula)

N

name (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) (biogeme.default_parameters.ParameterTuple attribute) (biogeme.draws.factory.DrawSpec attribute) (biogeme.expressions.elementary_expressions.Elementary attribute) (biogeme.expressions.multiple_expressions.NamedExpression attribute) (biogeme.latent_variables.latent_variables.LatentVariable attribute) (biogeme.latent_variables.likert_indicators.LikertIndicator attribute) (biogeme.latent_variables.structural_equation.StructuralEquation attribute) (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) (biogeme.parameters.NameSectionTuple attribute) (biogeme.sampling_of_alternatives.sampling_context.CrossVariableTuple attribute) named_function_output() (in module biogeme.expressions.named_expression) NamedCallableExpression (class in biogeme.jax_calculator.function_call) NamedExpression (class in biogeme.expressions.multiple_expressions) NamedFunctionOutput (class in biogeme.function_output) NamedFunctionResult (class in biogeme.function_output) NamedOutputMixin (class in biogeme.function_output) names (biogeme.expressions_registry.ElementsTuple attribute) NameSectionTuple (class in biogeme.parameters) NegativeLikelihood (class in biogeme.likelihood.negative_likelihood) nest_param (biogeme.nests.OneNestForCrossNestedLogit attribute) (biogeme.nests.OneNestForNestedLogit attribute) nested() (in module biogeme.models.nested) nested_mev_mu() (in module biogeme.models.nested) nestedMevMu() (in module biogeme.models.nested) Nests (class in biogeme.nests) NestsForCrossNestedLogit (class in biogeme.nests) NestsForNestedLogit (class in biogeme.nests) netcdf_filename (biogeme.biogeme.BIOGEME attribute) neutral_labels (biogeme.latent_variables.likert_indicators.LikertType attribute) NEVER (biogeme.second_derivatives.SecondDerivativesMode attribute) new_name (biogeme.expressions.rename_variables.OldNewName attribute) newton_linesearch_for_biogeme() (in module biogeme.optimization) newton_trust_region_for_biogeme() (in module biogeme.optimization) NONE (biogeme.bayesian_estimation.html_output.FigureSize attribute) NonMonotonic (class in biogeme.mdcev.non_monotonic)

normal_antithetic() (in module biogeme.draws.native_draws) normal_halton2() (in module biogeme.draws.native_draws) normal_halton3() (in module biogeme.draws.native_draws) normal_halton5() (in module biogeme.draws.native_draws) normal_logpdf() (in module biogeme.distributions) normal_MLHS() (in module biogeme.draws.native_draws) normal_MLHS_anti() (in module biogeme.draws.native_draws) NormalCdf (class in biogeme.expressions.normalcdf) normalization (biogeme.latent_variables.latent_variables.LatentVariable attribute) Normalization (class in biogeme.latent_variables.latent_variables) normalpdf() (in module biogeme.distributions) NotEqual (class in biogeme.expressions.comparison_expressions) NotImplementedError null_log_likelihood (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) null_loglikelihood (biogeme.biogeme.BIOGEME attribute), [1] num_columns() (biogeme.database.container.Database method) num_rows() (biogeme.database.container.Database method) num_runs (biogeme.tools.time.Timing property) number_of_alternatives (biogeme.mdcev.mdcev.Mdcev property) number_of_configurations() (biogeme.catalog.central_controller.CentralController method) number_of_draws (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_excluded_data (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_free_betas (biogeme.expressions_registry.ExpressionRegistry property) number_of_free_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_observations (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) number_of_parameters (biogeme.results_processing.estimation_results.EstimationResults property) number_of_random_variables (biogeme.expressions_registry.ExpressionRegistry property) number_of_segments() (biogeme.partition.Partition method) number_of_threads (biogeme.biogeme.BIOGEME attribute), [1] number_unknown_parameters() (biogeme.biogeme.BIOGEME method), [1] Numeric (class in biogeme.expressions.numeric_expressions) nuts_kwargs (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute)

O

OBS (biogeme.expressions.bayesian.Dimension attribute) observation_suffix() (in module biogeme.database.panel) old_name (biogeme.expressions.rename_variables.OldNewName attribute) OldNewName (class in biogeme.expressions.rename_variables) on_database_update() (biogeme.model_elements.model_elements.ModelElements method) OneNestForCrossNestedLogit (class in biogeme.nests) OneNestForNestedLogit (class in biogeme.nests) OneSegmentation (class in biogeme.segmentation.one_segmentation) optimal_consumption() (biogeme.mdcev.mdcev.Mdcev method) optimal_consumption_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) optimization() (in module biogeme.likelihood.model_estimation) optimization_algorithm (biogeme.biogeme.BIOGEME attribute), [1]

optimization_messages (biogeme.likelihood.model_estimation.AlgorithmResults attribute) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) optimization_parameters (biogeme.biogeme.BIOGEME property), [1] Or (class in biogeme.expressions.logical_or) ordered_logit() (in module biogeme.models.ordered) ordered_logit_from_thresholds() (in module biogeme.models.ordered) ordered_probit() (in module biogeme.models.ordered) ordered_probit_from_thresholds() (in module biogeme.models.ordered) OrderedBase (class in biogeme.expressions.ordered) OrderedLogit (class in biogeme.expressions.ordered) OrderedLogLogit (class in biogeme.expressions.ordered) OrderedLogProbit (class in biogeme.expressions.ordered) OrderedMimic (class in biogeme.latent_variables.ordered_mimic) OrderedProbit (class in biogeme.expressions.ordered) other_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) outside_good_index (biogeme.mdcev.mdcev.Mdcev property)

P

p_loo (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) p_value (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) p_waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) panel() (biogeme.database.container.Database method) panel_column (biogeme.expressions.prepare_for_panel.PanelColumnSetting attribute) panel_column_handler() (in module biogeme.expressions.prepare_for_panel) panel_id_handler() (in module biogeme.expressions.set_panel_id) PanelColumnSetting (class in biogeme.expressions.prepare_for_panel) PanelDatabase (class in biogeme.database.panel) PanelLikelihoodTrajectory (class in biogeme.expressions.panel_likelihood_trajectory) PanelLogLikelihood (class in biogeme.expressions.panel_log_likelihood) parameter_estimates() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) parameter_exists() (biogeme.parameters.Parameters method) parameter_file (biogeme.biogeme.BIOGEME attribute) parameter_names (biogeme.parameters.Parameters property) parameters (biogeme.bayesian_estimation.bayesian_results.BayesianResults attribute) Parameters (class in biogeme.parameters) parameters_in_section() (biogeme.parameters.Parameters method) ParameterTuple (class in biogeme.default_parameters) pareto_optimal() (in module biogeme.results_processing.pareto) ParetoPostProcessing (class in biogeme.assisted) parse_boolean() (in module biogeme.parameters) Partition (class in biogeme.partition) pickle_to_yaml() (in module biogeme.results_processing.recycle_pickle) piecewise_as_variable() (in module biogeme.models.piecewise) piecewise_formula() (in module biogeme.models.piecewise) piecewise_function() (in module biogeme.models.piecewise)

piecewise_variables() (in module biogeme.models.piecewise) plot() (biogeme.assisted.ParetoPostProcessing method) Plus (class in biogeme.expressions.plus) positive_parameter_factory (biogeme.latent_variables.likert_indicators.LikertIndicator attribute) (biogeme.latent_variables.likert_indicators.LikertType attribute) PositiveParameterFactory (class in biogeme.latent_variables.positive_parameter_factory) posterior_draws (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) posterior_mean_by_observation() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) posterior_predictive_loglike (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) PosteriorSummary (class in biogeme.bayesian_estimation.bayesian_results) Power (class in biogeme.expressions.power) PowerConstant (class in biogeme.expressions.power_constant) prefix (biogeme.latent_variables.structural_equation.StructuralEquation property) prefix_suffix_variable_name_handler() (in module biogeme.expressions.add_prefix_suffix) prepare() (biogeme.model_elements.database_adapter.FlatPanelAdapter method) (biogeme.model_elements.database_adapter.ModelElementsAdapter method) (biogeme.model_elements.database_adapter.RegularAdapter method) prepare_for_panel() (in module biogeme.expressions.prepare_for_panel) prepare_operators() (biogeme.catalog.central_controller.CentralController method) pretty_model() (in module biogeme.tools.pymc_utils) price_is_none (biogeme.mdcev.mdcev.MdcevConfiguration attribute) print_file_size() (in module biogeme.tools.files) print_general_statistics() (biogeme.results_processing.estimation_results.EstimationResults method) print_list_of_parameters() (in module biogeme.default_parameters) PriorFactory (class in biogeme.expressions.beta_parameters) process_row() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) pymc_formula_evaluator() (in module biogeme.pymc_calculator) PymcModelBuilderType (class in biogeme.expressions.bayesian)

Q

quick_estimate() (biogeme.biogeme.BIOGEME method), [1]

R

RANDOM_VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) random_variables (biogeme.expressions_registry.ExpressionRegistry property) random_variables_indices (biogeme.expressions_registry.ExpressionRegistry property) RandomNumberGeneratorTuple (class in biogeme.draws.native_draws) RandomVariable (class in biogeme.expressions.random_variable) RAO_CRAMER (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) rao_cramer_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) RawBayesianResults (class in biogeme.bayesian_estimation.raw_bayesian_results) RawEstimationResults (class in biogeme.results_processing.raw_estimation_results) RawResults (class in biogeme.results_processing.recycle_pickle) read_data() (in module biogeme.data.mdcev_data) (in module biogeme.data.optima) (in module biogeme.data.swissmetro) read_file() (biogeme.parameters.Parameters method) read_pickle_biogeme() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_10() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_11() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_12() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_13() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_14() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_7() (in module biogeme.results_processing.recycle_pickle) read_pickle_biogeme_3_2_8() (in module biogeme.results_processing.recycle_pickle) reason (biogeme.validity.Validity attribute) recursive_construct_jax_function() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.derive.Derive method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.random_variable.RandomVariable method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method) recursive_construct_jax_function_beta() (biogeme.expressions.derive.Derive method) recursive_construct_jax_function_variable() (biogeme.expressions.derive.Derive method) recursive_construct_pymc_model_builder() (biogeme.expressions.belongs_to.BelongsTo method) (biogeme.expressions.beta_parameters.Beta method) (biogeme.expressions.binary_max.BinaryMax method) (biogeme.expressions.binary_min.BinaryMin method) (biogeme.expressions.boxcox.BoxCox method) (biogeme.expressions.comparison_expressions.Equal method) (biogeme.expressions.comparison_expressions.Greater method) (biogeme.expressions.comparison_expressions.GreaterOrEqual method) (biogeme.expressions.comparison_expressions.Less method) (biogeme.expressions.comparison_expressions.LessOrEqual method) (biogeme.expressions.comparison_expressions.NotEqual method) (biogeme.expressions.conditional_sum.ConditionalSum method) (biogeme.expressions.cos.cos method) (biogeme.expressions.distributed_parameter.DistributedParameter method) (biogeme.expressions.divide.Divide method) (biogeme.expressions.draws.Draws method) (biogeme.expressions.elem.Elem method) (biogeme.expressions.exp.exp method) (biogeme.expressions.expm1.expm1 method) (biogeme.expressions.linear_utility.LinearUtility method) (biogeme.expressions.log.log method) (biogeme.expressions.logical_and.And method) (biogeme.expressions.logical_or.Or method) (biogeme.expressions.logit_expressions.LogLogit method) (biogeme.expressions.logzero.logzero method) (biogeme.expressions.minus.Minus method) (biogeme.expressions.montecarlo.MonteCarlo method) (biogeme.expressions.multiple_product.MultipleProduct method) (biogeme.expressions.multiple_sum.MultipleSum method) (biogeme.expressions.normalcdf.NormalCdf method) (biogeme.expressions.numeric_expressions.Numeric method) (biogeme.expressions.ordered.OrderedBase method) (biogeme.expressions.ordered.OrderedLogLogit method) (biogeme.expressions.ordered.OrderedLogProbit method) (biogeme.expressions.panel_log_likelihood.PanelLogLikelihood method) (biogeme.expressions.plus.Plus method) (biogeme.expressions.power.Power method) (biogeme.expressions.power_constant.PowerConstant method) (biogeme.expressions.sin.sin method) (biogeme.expressions.times.Times method) (biogeme.expressions.unary_minus.UnaryMinus method) (biogeme.expressions.variable.Variable method)

recursive_construct_pymc_model_builder_old() (biogeme.expressions.logit_expressions.LogLogit method) reestimate() (biogeme.assisted.ParetoPostProcessing method) register() (biogeme.expressions.collectors.ExpressionCollector method) (biogeme.expressions.visitor.ExpressionVisitor method) register_listener() (biogeme.database.container.Database method) regression_likelihood() (in module biogeme.likelihood.linear_regression) regression_loglikelihood() (in module biogeme.likelihood.linear_regression) RegularAdapter (class in biogeme.model_elements.database_adapter) remove() (biogeme.database.container.Database method) (biogeme.tools.files.TemporaryFile method) remove_column() (biogeme.database.container.Database method) remove_rows() (biogeme.database.container.Database method) (biogeme.draws.management.DrawsManagement method) rename_all_variables() (in module biogeme.expressions.rename_variables) rename_and_renumber() (in module biogeme.results_processing.latex_output) rename_elementary() (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.multiple_expressions.MultipleExpression method) rename_variable_handler() (in module biogeme.expressions.rename_variables) report_array() (biogeme.biogeme.BIOGEME method), [1] report_jax_cpu_devices() (in module biogeme.tools.jax_multicore) report_stored_variables() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) reporting() (biogeme.sampling_of_alternatives.sampling_context.SamplingContext method) requires_draws (biogeme.expressions_registry.ExpressionRegistry property) requires_draws() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) reset_indices() (biogeme.database.container.Database method) reset_selection() (biogeme.catalog.central_controller.CentralController method) (biogeme.catalog.controller.Controller method) retrieve_saved_estimates() (biogeme.biogeme.BIOGEME method), [1] rhat (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) rho_bar_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_bar_square_null (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_init (biogeme.results_processing.estimation_results.EstimationResults property) rho_square_null (biogeme.results_processing.estimation_results.EstimationResults property) ROBUST (biogeme.results_processing.variance_covariance.EstimateVarianceCovariance attribute) robust_variance_covariance_matrix (biogeme.results_processing.estimation_results.EstimationResults property) rows_slice() (biogeme.database.panel_map.ContiguousPanelMap method) run() (biogeme.assisted.AssistedSpecification method) run_sampling() (in module biogeme.bayesian_estimation.sampling) run_time (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property)

S

safe_beta_id (biogeme.expressions.beta_parameters.Beta property) safe_deserialize_array() (in module biogeme.tools.serialize_numpy) safe_draw_id (biogeme.expressions.draws.Draws property) safe_rv_id (biogeme.expressions.integrate.IntegrateNormal property) (biogeme.expressions.random_variable.RandomVariable property) safe_serialize_array() (in module biogeme.tools.serialize_numpy) safe_variable_id (biogeme.expressions.variable.Variable property) sample_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_and_merge() (biogeme.sampling_of_alternatives.choice_set_generation.ChoiceSetsGeneration method) sample_mev_alternatives() (biogeme.sampling_of_alternatives.sampling_of_alternatives.SamplingOfAlternatives method) sample_panel_with_replacement() (in module biogeme.database.sampling) sample_size (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.database_adapter.FlatPanelAdapter property) (biogeme.model_elements.database_adapter.ModelElementsAdapter property) (biogeme.model_elements.database_adapter.RegularAdapter property) (biogeme.model_elements.model_elements.ModelElements property) (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) sample_sizes (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) sample_with_replacement() (in module biogeme.database.sampling) sampler (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) sampling_protocol (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) SamplingConfig (class in biogeme.bayesian_estimation.sampling_strategy) SamplingContext (class in biogeme.sampling_of_alternatives.sampling_context) SamplingOfAlternatives (class in biogeme.sampling_of_alternatives.sampling_of_alternatives) save() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method) save_iterations (biogeme.biogeme.BIOGEME attribute), [1] save_iterations() (biogeme.likelihood.negative_likelihood.NegativeLikelihood method) scale_column() (biogeme.database.container.Database method) scale_normalization (biogeme.latent_variables.likert_indicators.LikertType attribute) scale_parameter (biogeme.latent_variables.likert_indicators.LikertIndicator property) scipy() (in module biogeme.optimization) second_derivatives (biogeme.biogeme.BIOGEME attribute), [1] SecondDerivativesMode (class in biogeme.second_derivatives) section (biogeme.default_parameters.ParameterTuple attribute) (biogeme.parameters.NameSectionTuple attribute) sections (biogeme.parameters.Parameters property) sections_from_name() (biogeme.parameters.Parameters method) seed (biogeme.biogeme.BIOGEME attribute), [1] Segmentation (class in biogeme.segmentation.segmentation) segmentation_catalogs() (in module biogeme.catalog.segmentation_catalog) segmented_beta() (biogeme.segmentation.segmentation.Segmentation method) (in module biogeme.segmentation.segmented_beta) segmented_code() (biogeme.segmentation.segmentation.Segmentation method) SegmentedParameters (class in biogeme.catalog.segmentation_catalog) selected() (biogeme.catalog.catalog.Catalog method) (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_expression() (biogeme.expressions.multiple_expressions.MultipleExpression method) selected_name() (biogeme.expressions.multiple_expressions.MultipleExpression method) SelectedConfigurationsIterator (class in biogeme.catalog.catalog_iterator) selection (biogeme.catalog.configuration.SelectionTuple attribute) selections (biogeme.catalog.configuration.Configuration property) SelectionTuple (class in biogeme.catalog.configuration) serialize_to_yaml() (in module biogeme.results_processing.raw_estimation_results) set_configuration() (biogeme.catalog.central_controller.CentralController method) set_configuration_from_id() (biogeme.catalog.central_controller.CentralController method) set_controller() (biogeme.catalog.central_controller.CentralController method) set_draw_dimension_for_all_draws() (in module biogeme.expressions.prepare_for_panel) set_draw_dimension_handler() (in module biogeme.expressions.prepare_for_panel) set_draw_per_individual() (biogeme.expressions.draws.Draws method) set_draw_per_observation() (biogeme.expressions.draws.Draws method) set_index() (biogeme.catalog.controller.Controller method)

set_maximum_number_of_observations_per_individual() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.multiple_expressions.MultipleExpression method) (biogeme.expressions.panel_likelihood_trajectory.PanelLikelihoodTrajectory method) set_name() (biogeme.catalog.controller.Controller method) set_of_controllers() (biogeme.catalog.configuration.Configuration method) set_panel_column_on_distributed_parameters() (in module biogeme.expressions.prepare_for_panel) set_panel_id() (in module biogeme.expressions.set_panel_id) set_random_init_values() (biogeme.biogeme.BIOGEME method), [1] set_several_parameters() (biogeme.parameters.Parameters method) set_specific_id() (biogeme.expressions.base_expressions.Expression method) (biogeme.expressions.elementary_expressions.Elementary method) (biogeme.expressions.integrate.IntegrateNormal method) (biogeme.expressions.multiple_expressions.MultipleExpression method) set_value() (biogeme.parameters.Parameters method) short_names (biogeme.biogeme.BIOGEME attribute) short_summary() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) (biogeme.results_processing.estimation_results.EstimationResults method) sigma_factory (biogeme.latent_variables.latent_variables.LatentVariable attribute) (biogeme.latent_variables.likert_indicators.LikertIndicator attribute) (biogeme.latent_variables.likert_indicators.LikertType attribute) (biogeme.latent_variables.ordered_mimic.OrderedMimic attribute) (biogeme.latent_variables.structural_equation.StructuralEquation attribute) SigmaFactory (class in biogeme.latent_variables.positive_parameter_factory) simple_bounds_newton_algorithm_for_biogeme() (in module biogeme.optimization) simulate() (biogeme.biogeme.BIOGEME method), [1] (in module biogeme.tools.simulate) simulate_bayesian() (biogeme.biogeme.BIOGEME method), [1] simulated_values (biogeme.validation.cross_validation.ValidationResult attribute) sin (class in biogeme.expressions.sin) sin_phi (biogeme.tools.ellipse.Ellipse attribute) SMALL (biogeme.bayesian_estimation.html_output.FigureSize attribute) smallest_eigenvalue (biogeme.results_processing.estimation_results.EstimationResults property) smallest_eigenvector (biogeme.results_processing.estimation_results.EstimationResults property) solution (biogeme.likelihood.model_estimation.AlgorithmResults attribute) sorting_utility_one_alternative() (biogeme.mdcev.generalized.Generalized method) Specification (class in biogeme.catalog.specification) split() (in module biogeme.validation.prepare_validation) split_databases() (in module biogeme.validation.split_databases) split_validation_sets() (in module biogeme.database.sampling) starts (biogeme.database.panel_map.ContiguousPanelMap attribute) statement (biogeme.latent_variables.likert_indicators.LikertIndicator attribute) statistic (biogeme.tools.likelihood_ratio.LRTuple attribute) status (biogeme.validity.Validity attribute) std_err (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute) steptol (biogeme.biogeme.BIOGEME attribute), [1] StratumTuple (class in biogeme.sampling_of_alternatives.sampling_context) structural_equation (biogeme.latent_variables.latent_variables.LatentVariable attribute) structural_equation_jax (biogeme.latent_variables.latent_variables.LatentVariable property) StructuralEquation (class in biogeme.latent_variables.structural_equation) subset (biogeme.sampling_of_alternatives.sampling_context.StratumTuple attribute) suggest_scaling() (biogeme.database.container.Database method) sum_of_utilities() (biogeme.mdcev.mdcev.Mdcev method) summarize_array_variable() (biogeme.bayesian_estimation.bayesian_results.BayesianResults method) suppress_logs() (in module biogeme.biogeme_logging) symm_halton2() (in module biogeme.draws.native_draws) symm_halton3() (in module biogeme.draws.native_draws) symm_halton5() (in module biogeme.draws.native_draws) symm_MLHS() (in module biogeme.draws.native_draws) symm_MLHS_anti() (in module biogeme.draws.native_draws) symm_uniform() (in module biogeme.draws.native_draws) symm_uniform_antithetic() (in module biogeme.draws.native_draws) symmetric (biogeme.latent_variables.likert_indicators.LikertType attribute)

T

target_accept (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.bayesian_estimation.sampling_strategy.SamplingConfig attribute) TemporaryFile (class in biogeme.tools.files) term (biogeme.expressions.conditional_sum.ConditionalTermTuple attribute) the_dimension (biogeme.likelihood.negative_likelihood.NegativeLikelihood attribute) the_partition (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) threshold (biogeme.tools.likelihood_ratio.LRTuple attribute) time_function() (biogeme.tools.time.Timing method) timedelta_constructor() (in module biogeme.tools.yaml) timedelta_representer() (in module biogeme.tools.yaml) timeit() (in module biogeme.tools.timeit_context_manager) timeit_old() (in module biogeme.tools.timeit_decorator) Times (class in biogeme.expressions.times) Timing (class in biogeme.tools.time) to_dict() (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults method)

tolerance (biogeme.biogeme.BIOGEME attribute), [1] total_mev_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) total_sample_size (biogeme.sampling_of_alternatives.sampling_context.SamplingContext property) transformed_utility() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) Translated (class in biogeme.mdcev.translated) triangularpdf() (in module biogeme.distributions) two_controllers() (biogeme.catalog.central_controller.CentralController method) type (biogeme.default_parameters.ParameterTuple attribute) (biogeme.latent_variables.likert_indicators.LikertIndicator attribute) (biogeme.latent_variables.likert_indicators.LikertType attribute) TypeOfElementaryExpression (class in biogeme.expressions.elementary_types) types_of_draws (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

U

UnaryMinus (class in biogeme.expressions.unary_minus) UnaryOperator (class in biogeme.expressions.unary_expressions) uniform_antithetic() (in module biogeme.draws.native_draws) uniformpdf() (in module biogeme.distributions) unique_entry() (biogeme.function_output.DisaggregateFunctionOutput method) unique_ids (biogeme.database.panel_map.ContiguousPanelMap attribute) unique_product() (in module biogeme.tools.unique_ids) upper_bounds (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute) use_flatten_database (biogeme.biogeme.BIOGEME property), [1] user_defined_validity_check (biogeme.catalog.specification.Specification attribute) user_notes (biogeme.bayesian_estimation.raw_bayesian_results.RawBayesianResults property) (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.results_processing.raw_estimation_results.RawEstimationResults attribute)

utility_expression_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method) utility_function (biogeme.sampling_of_alternatives.sampling_context.SamplingContext attribute) utility_one_alternative() (biogeme.mdcev.gamma_profile.GammaProfile method) (biogeme.mdcev.generalized.Generalized method) (biogeme.mdcev.mdcev.Mdcev method) (biogeme.mdcev.non_monotonic.NonMonotonic method) (biogeme.mdcev.translated.Translated method)

V

validate() (biogeme.biogeme.BIOGEME method), [1] validate_and_convert() (in module biogeme.expressions.convert) validate_dict_types() (in module biogeme.tools.checks) validate_expression_type() (in module biogeme.expressions.validation) validate_forecast() (biogeme.mdcev.mdcev.Mdcev method) validate_partition() (biogeme.partition.Partition method) validate_segments() (biogeme.partition.Partition method) validation (biogeme.validation.prepare_validation.EstimationValidationIndices attribute) (biogeme.validation.split_databases.EstimationValidationModels attribute) validation() (biogeme.mdcev.mdcev.Mdcev method) validation_modeling_elements (biogeme.validation.cross_validation.ValidationResult attribute) validation_one_alternative() (biogeme.mdcev.mdcev.Mdcev method) validation_one_alternative_one_consumption() (biogeme.mdcev.mdcev.Mdcev method) ValidationResult (class in biogeme.validation.cross_validation)

Validity (class in biogeme.validity) value (biogeme.default_parameters.ParameterTuple attribute) (biogeme.expressions.numeric_expressions.Numeric attribute) ValueOutOfRange VARIABLE (biogeme.expressions.elementary_types.TypeOfElementaryExpression attribute) Variable (class in biogeme.expressions.variable) variables (biogeme.expressions.linear_utility.LinearUtility attribute) (biogeme.expressions_registry.ExpressionRegistry property) variables_indices (biogeme.expressions_registry.ExpressionRegistry property) variance_covariance_missing (biogeme.results_processing.estimation_results.EstimationResults property) verify_segmentation() (biogeme.database.container.Database method) (in module biogeme.segmentation.database) VERY_LARGE (biogeme.bayesian_estimation.html_output.FigureSize attribute) visit() (biogeme.expressions.visitor.ExpressionVisitor method)

W

waic (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) waic_res (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) waic_se (biogeme.bayesian_estimation.bayesian_results.BayesianResults property) walk() (biogeme.expressions.collectors.ExpressionCollector method) warm_up_runs (biogeme.tools.time.Timing property) warning_cpu_devices() (in module biogeme.tools.jax_multicore)

warnings (biogeme.audit_tuple.AuditTuple attribute) weight (biogeme.biogeme.BIOGEME property), [1] (biogeme.model_elements.model_elements.ModelElements property) weight_name (biogeme.biogeme.BIOGEME attribute), [1] (biogeme.model_elements.model_elements.ModelElements attribute) write_f12() (biogeme.results_processing.estimation_results.EstimationResults method) write_latex() (biogeme.results_processing.estimation_results.EstimationResults method)

X

x (biogeme.expressions.linear_utility.LinearTermTuple attribute)

Y

yaml_filename (biogeme.biogeme.BIOGEME attribute)

Z

z_value (biogeme.bayesian_estimation.bayesian_results.EstimatedBeta attribute)

zero_one() (in module biogeme.check_parameters)