Source code for biogeme.expressions.log
"""Arithmetic expressions accepted by Biogeme: log
Michel Bierlaire
10.04.2025 11:07
"""
from __future__ import annotations
import logging
import jax
import numpy as np
import pandas as pd
import pytensor.tensor as pt
from jax import numpy as jnp
from biogeme.floating_point import EPSILON
from .base_expressions import ExpressionOrNumeric
from .bayesian import PymcModelBuilderType
from .jax_utils import JaxFunctionType
from .unary_expressions import UnaryOperator
logger = logging.getLogger(__name__)
[docs]
class log(UnaryOperator):
"""
logarithm expression
"""
def __init__(self, child: ExpressionOrNumeric):
"""Constructor
:param child: first arithmetic expression
:type child: biogeme.expressions.Expression
"""
super().__init__(child)
[docs]
def deep_flat_copy(self) -> log:
"""Provides a copy of the expression. It is deep in the sense that it generates copies of the children.
It is flat in the sense that any `MultipleExpression` is transformed into the currently selected expression.
The flat part is irrelevant for this expression.
"""
copy_child = self.child.deep_flat_copy()
return type(self)(child=copy_child)
def __str__(self) -> str:
return f'log({self.child})'
def __repr__(self) -> str:
return f'log({repr(self.child)})'
[docs]
def get_value(self) -> float:
"""Evaluates the value of the expression
:return: value of the expression
:rtype: float
"""
return np.log(self.child.get_value())
[docs]
def recursive_construct_jax_function(
self, numerically_safe: bool
) -> JaxFunctionType:
"""
Generates a function to be used by biogeme_jax. Must be overloaded by each
expression
:return: the function takes two parameters: the parameters, and one row
of the database.
"""
child_jax = self.child.recursive_construct_jax_function(
numerically_safe=numerically_safe
)
if numerically_safe:
def the_jax_function(
parameters: jnp.ndarray,
one_row: jnp.ndarray,
the_draws: jnp.ndarray,
the_random_variables: jnp.ndarray,
) -> jnp.ndarray:
child_value = child_jax(
parameters, one_row, the_draws, the_random_variables
)
epsilon = EPSILON
slope = 1.0 / epsilon
intercept = jnp.log(epsilon) - slope * epsilon
approx_log = slope * child_value + intercept
return jax.lax.cond(
child_value < epsilon,
lambda _: approx_log,
lambda _: jnp.log(child_value),
operand=None,
)
# result = jnp.log(
# (child_value + jnp.sqrt(child_value**2 + EPSILON**2)) / 2
# )
# return result
return the_jax_function
def the_jax_function(
parameters: jnp.ndarray,
one_row: jnp.ndarray,
the_draws: jnp.ndarray,
the_random_variables: jnp.ndarray,
) -> jnp.ndarray:
child_value = child_jax(
parameters, one_row, the_draws, the_random_variables
)
return jnp.log(child_value)
return the_jax_function
[docs]
def recursive_construct_pymc_model_builder(self) -> PymcModelBuilderType:
"""
Generates recursively a function to be used by PyMc. Must be overloaded by each expression
:return: the expression in TensorVariable format, suitable for PyMc
"""
child_pymc = self.child.recursive_construct_pymc_model_builder()
def builder(dataframe: pd.DataFrame) -> pt.TensorVariable:
child_value = child_pymc(dataframe=dataframe)
return pt.log(child_value)
return builder